Variant report

Variant	rs10858428
Chromosome Location	chr12:86830577-86830578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10431399	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap]
rs10735250	0.82[CHB][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs10745407	0.85[CEU][hapmap]
rs10745408	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs10745416	0.81[CHB][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10745419	0.82[CHB][hapmap]
rs10776955	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs10776961	0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10776966	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs10776968	0.94[AMR][1000 genomes]
rs10776969	0.89[CEU][hapmap];0.81[YRI][hapmap]
rs10776971	1.00[CEU][hapmap]
rs10776976	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10776977	0.83[CHB][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10858408	0.85[CEU][hapmap]
rs10858412	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10858419	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10858425	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[YRI][hapmap]
rs10858427	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[YRI][hapmap]
rs10858436	0.83[YRI][hapmap]
rs10858444	0.86[YRI][hapmap]
rs11103983	0.82[CHB][hapmap]
rs12317113	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[YRI][hapmap]
rs12578669	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[YRI][hapmap]
rs12582690	0.84[CHB][hapmap]
rs1493415	0.81[CEU][hapmap]
rs1922742	0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1922749	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap]
rs1955399	0.82[CHB][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2091818	0.96[CEU][hapmap]
rs2131565	0.81[CEU][hapmap]
rs2405923	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs2405925	0.89[CEU][hapmap];0.80[CHB][hapmap]
rs2405928	0.89[CEU][hapmap];0.90[CHB][hapmap]
rs2405930	0.90[CHB][hapmap];0.85[AMR][1000 genomes]
rs2406115	0.84[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2406116	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs2406118	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs2406122	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs2406123	0.85[CEU][hapmap]
rs2406127	0.85[CEU][hapmap]
rs2406160	0.86[YRI][hapmap]
rs2452806	0.81[CEU][hapmap]
rs2452807	0.81[CEU][hapmap]
rs2465143	0.83[CHB][hapmap]
rs2465144	0.81[CEU][hapmap]
rs2471568	0.81[CEU][hapmap]
rs2471569	0.81[CEU][hapmap]
rs2897278	0.81[CEU][hapmap]
rs2897280	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs4265650	0.82[CEU][hapmap]
rs4370997	0.87[YRI][hapmap]
rs4399378	0.83[YRI][hapmap]
rs4628748	0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4842483	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs6538029	0.85[CEU][hapmap]
rs6538033	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs6538042	0.81[CHB][hapmap];0.96[YRI][hapmap]
rs6538046	0.93[YRI][hapmap]
rs7135177	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs7139324	0.81[CHB][hapmap]
rs7297574	0.90[YRI][hapmap]
rs7299319	0.88[CEU][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap]
rs7303796	0.81[CHB][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7953196	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs7957560	0.85[CEU][hapmap]
rs7963659	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs7964553	0.85[CEU][hapmap]
rs7972484	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7973543	0.93[YRI][hapmap]
rs7973773	0.85[CEU][hapmap]
rs7977689	0.80[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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