Variant report

Variant	rs10858444
Chromosome Location	chr12:86973624-86973625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10431399	0.83[JPT][hapmap]
rs10735250	0.83[JPT][hapmap];0.93[YRI][hapmap]
rs10745416	0.82[JPT][hapmap];0.90[YRI][hapmap]
rs10745419	0.83[JPT][hapmap]
rs10745430	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10776969	0.83[JPT][hapmap]
rs10776977	0.82[JPT][hapmap]
rs10776992	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10858425	0.83[JPT][hapmap];0.85[YRI][hapmap]
rs10858427	0.83[JPT][hapmap];0.84[YRI][hapmap]
rs10858428	0.86[YRI][hapmap]
rs10858436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10858441	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10858465	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap]
rs10858468	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11103983	0.83[JPT][hapmap]
rs12317113	0.83[JPT][hapmap];0.86[YRI][hapmap]
rs12578669	0.83[JPT][hapmap];0.81[YRI][hapmap]
rs1469383	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1922742	0.83[JPT][hapmap];0.86[YRI][hapmap]
rs1922749	0.83[JPT][hapmap]
rs1955399	0.90[YRI][hapmap]
rs2016230	0.85[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2081817	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2091818	0.82[JPT][hapmap]
rs2114893	0.84[CEU][hapmap];0.94[CHB][hapmap]
rs2162674	0.85[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2405923	0.83[YRI][hapmap]
rs2406160	0.87[YRI][hapmap]
rs2406250	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2406254	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs4240751	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs4322459	0.91[CEU][hapmap]
rs4370997	0.87[YRI][hapmap]
rs4399378	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs4842819	0.85[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs4842820	0.85[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap]
rs6538042	0.83[JPT][hapmap];0.89[YRI][hapmap]
rs6538046	0.94[CHB][hapmap];1.00[YRI][hapmap]
rs7139324	0.82[JPT][hapmap]
rs7297574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7303796	0.83[JPT][hapmap];0.83[YRI][hapmap]
rs7963659	0.83[JPT][hapmap];0.92[YRI][hapmap]
rs7973223	0.83[CHB][hapmap]
rs7973543	0.93[YRI][hapmap]
rs7977253	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv559690	chr12:86929340-87020377	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv916604	chr12:86966256-87275268	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1049580	chr12:86966497-87354132	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv976753	chr12:86968778-86977669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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