Variant report

Variant	rs10863128
Chromosome Location	chr12:86365790-86365791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86365669..86366250-chr12:86579981..86580554,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10746359	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs10779224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779226	1.00[JPT][hapmap]
rs10779227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs10779236	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs10863113	0.82[EUR][1000 genomes]
rs10863129	0.91[ASN][1000 genomes]
rs10863131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10863141	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10863149	1.00[CHB][hapmap]
rs10863164	1.00[CHB][hapmap]
rs11117124	0.82[EUR][1000 genomes]
rs11117148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117149	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117150	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117152	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11117154	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs11513955	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11614214	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11615948	0.86[GIH][hapmap];0.90[TSI][hapmap]
rs12298516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1354258	1.00[CHB][hapmap]
rs1493407	0.84[CEU][hapmap]
rs1502803	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1698754	0.83[CEU][hapmap]
rs1847206	0.91[ASN][1000 genomes]
rs61931064	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931120	1.00[ASN][1000 genomes]
rs61931121	1.00[ASN][1000 genomes]
rs6539944	0.91[ASN][1000 genomes]
rs6539947	0.87[ASN][1000 genomes]
rs7135154	0.83[EUR][1000 genomes]
rs7136221	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7294859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7295033	0.83[ASN][1000 genomes]
rs7302043	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs7307686	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7398950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs7485853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486591	1.00[CEU][hapmap]
rs7489114	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs7961367	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[ASN][1000 genomes]
rs7965726	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7967417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[TSI][hapmap]
rs7971447	1.00[ASN][1000 genomes]
rs839091	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs839135	0.84[CEU][hapmap]
rs9668994	1.00[JPT][hapmap]
rs9669353	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[TSI][hapmap]
rs9706029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap]
rs9738989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9804820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86365200-86365800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr12:86365400-86365800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:86365400-86365800	Enhancers	HUES6 Cell Line	embryonic stem cell

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