Variant report

Variant	rs10863149
Chromosome Location	chr12:86425498-86425499
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10746359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10779220	0.82[EUR][1000 genomes]
rs10779224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10779225	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10779227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10779231	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10779236	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10863111	0.83[EUR][1000 genomes]
rs10863112	0.83[EUR][1000 genomes]
rs10863114	0.86[EUR][1000 genomes]
rs10863121	0.86[EUR][1000 genomes]
rs10863124	0.88[EUR][1000 genomes]
rs10863128	0.81[ASN][1000 genomes]
rs10863135	0.96[CEU][hapmap]
rs10863139	1.00[CHB][hapmap]
rs10863141	1.00[CHB][hapmap]
rs10863146	0.96[CEU][hapmap]
rs10863155	0.93[CEU][hapmap]
rs10863162	0.82[CEU][hapmap]
rs10863164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11117115	0.83[EUR][1000 genomes]
rs11117118	0.86[EUR][1000 genomes]
rs11117122	0.86[EUR][1000 genomes]
rs11117129	0.84[EUR][1000 genomes]
rs11117146	0.96[CEU][hapmap]
rs11117148	1.00[CHB][hapmap]
rs11117152	1.00[CHB][hapmap]
rs11117154	1.00[CHB][hapmap]
rs11117167	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11513955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11513957	0.96[CEU][hapmap]
rs11614214	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12298516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12301701	0.85[CEU][hapmap]
rs12369468	0.83[EUR][1000 genomes]
rs12370270	0.87[EUR][1000 genomes]
rs12809288	0.86[EUR][1000 genomes]
rs1354258	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1493407	1.00[JPT][hapmap]
rs1502799	0.82[CEU][hapmap]
rs1502800	0.85[CEU][hapmap]
rs1502803	1.00[CHB][hapmap]
rs17354637	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1847206	0.91[ASN][1000 genomes]
rs61929394	0.86[EUR][1000 genomes]
rs61929395	0.86[EUR][1000 genomes]
rs61929421	0.83[EUR][1000 genomes]
rs61931120	0.81[ASN][1000 genomes]
rs61931121	0.81[ASN][1000 genomes]
rs6539935	0.96[CEU][hapmap]
rs6539941	0.88[EUR][1000 genomes]
rs6539942	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs6539944	0.91[ASN][1000 genomes]
rs6539947	0.87[ASN][1000 genomes]
rs7132262	0.87[EUR][1000 genomes]
rs7136221	0.81[ASN][1000 genomes]
rs7294859	1.00[CHB][hapmap]
rs7295033	0.83[ASN][1000 genomes]
rs7301280	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7302043	1.00[CHB][hapmap]
rs7303256	0.83[EUR][1000 genomes]
rs7305869	0.96[CEU][hapmap]
rs7307686	0.81[ASN][1000 genomes]
rs7313373	0.96[CEU][hapmap]
rs7313442	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7314272	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73176252	0.84[EUR][1000 genomes]
rs7397730	0.85[CEU][hapmap]
rs7398950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7485285	0.82[CEU][hapmap]
rs7485853	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7487591	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7489114	1.00[CHB][hapmap]
rs7955173	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs7961367	0.81[ASN][1000 genomes]
rs7965726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7966131	0.87[EUR][1000 genomes]
rs7966352	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7967417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7971447	0.81[ASN][1000 genomes]
rs7972773	0.83[EUR][1000 genomes]
rs7973694	0.83[EUR][1000 genomes]
rs7975310	0.83[EUR][1000 genomes]
rs7975457	0.96[CEU][hapmap]
rs7978562	0.89[CEU][hapmap]
rs8181635	0.82[CEU][hapmap]
rs839091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs839135	1.00[JPT][hapmap]
rs865720	0.80[CEU][hapmap]
rs952851	0.82[CEU][hapmap]
rs9669353	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9706029	1.00[CHB][hapmap]
rs9738989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9804820	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv559668	chr12:86416212-86432115	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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