Variant report

Variant	rs10863548
Chromosome Location	chr1:220563550-220563551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220562663..220564192-chr1:220565315..220567647,2	K562	blood:
2	chr1:220563390..220564967-chr1:220565289..220568036,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10157171	0.85[AFR][1000 genomes]
rs1022178	0.85[AFR][1000 genomes]
rs10495148	1.00[AMR][1000 genomes]
rs10746397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10863547	0.85[AFR][1000 genomes]
rs10863549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1112147	1.00[AMR][1000 genomes]
rs11799728	1.00[AMR][1000 genomes]
rs11800084	1.00[AMR][1000 genomes]
rs11800803	1.00[AMR][1000 genomes]
rs11801306	1.00[AMR][1000 genomes]
rs11802827	1.00[AMR][1000 genomes]
rs11803715	1.00[AMR][1000 genomes]
rs11810690	1.00[AMR][1000 genomes]
rs11811839	1.00[AMR][1000 genomes]
rs1338769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1338772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361254	1.00[AMR][1000 genomes]
rs1361255	1.00[AMR][1000 genomes]
rs1511696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007924	1.00[AMR][1000 genomes]
rs17008033	1.00[AMR][1000 genomes]
rs1999935	0.97[AFR][1000 genomes]
rs1999937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2221832	0.97[AFR][1000 genomes]
rs3860320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4105051	0.93[AFR][1000 genomes]
rs4282827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57176776	1.00[AMR][1000 genomes]
rs6541144	1.00[AMR][1000 genomes]
rs6660112	1.00[AMR][1000 genomes]
rs6671023	1.00[AMR][1000 genomes]
rs6673589	1.00[AMR][1000 genomes]
rs6684421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696558	1.00[AMR][1000 genomes]
rs6704108	1.00[AMR][1000 genomes]
rs74139644	1.00[AMR][1000 genomes]
rs7512854	1.00[AMR][1000 genomes]
rs7527902	1.00[AMR][1000 genomes]
rs7536389	1.00[AMR][1000 genomes]
rs7550011	1.00[AMR][1000 genomes]
rs7554825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220562600-220563800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:220563000-220563800	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links