Variant report

Variant	rs10863561
Chromosome Location	chr1:220840630-220840631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220835982..220838164-chr1:220838675..220841663,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225782	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10495149	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10746403	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779412	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779413	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779414	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11118576	0.83[ASN][1000 genomes]
rs11118579	0.83[ASN][1000 genomes]
rs11118584	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118588	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1193032	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12044432	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12126252	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12735691	0.81[ASN][1000 genomes]
rs2152836	0.83[ASN][1000 genomes]
rs2378400	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2378402	0.82[AMR][1000 genomes]
rs2786606	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2889895	0.97[ASN][1000 genomes]
rs3737296	0.81[AMR][1000 genomes]
rs3767320	0.83[ASN][1000 genomes]
rs3767321	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3767323	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3820347	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3899315	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3905814	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4338357	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846327	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4846655	0.83[ASN][1000 genomes]
rs4846657	0.81[AMR][1000 genomes]
rs6541154	0.82[ASN][1000 genomes]
rs6695583	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6699189	0.81[AMR][1000 genomes]
rs6699196	0.81[AMR][1000 genomes]
rs7514431	0.82[AMR][1000 genomes]
rs9430949	0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220791200-220841200	Weak transcription	HMEC	breast
2	chr1:220829400-220847200	Weak transcription	Right Ventricle	heart
3	chr1:220829600-220845800	Weak transcription	Fetal Heart	heart
4	chr1:220831400-220845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:220835600-220840800	Weak transcription	Fetal Brain Female	brain
6	chr1:220836200-220842800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links