Variant report

Variant	rs10863874
Chromosome Location	chr1:211177696-211177697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10494931	0.81[CEU][hapmap]
rs10494932	0.82[CEU][hapmap]
rs10863870	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11119637	0.80[ASN][1000 genomes]
rs11119658	0.81[CEU][hapmap]
rs11119662	0.96[ASN][1000 genomes]
rs11485203	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11578692	0.81[AFR][1000 genomes]
rs11579078	0.83[AFR][1000 genomes]
rs11582507	0.81[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11583101	0.82[CEU][hapmap]
rs12722738	0.95[AFR][1000 genomes]
rs12750762	0.85[AFR][1000 genomes]
rs12760791	0.81[CEU][hapmap]
rs1393026	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1393028	0.82[CEU][hapmap]
rs1501551	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs1501558	0.81[CEU][hapmap];0.91[YRI][hapmap]
rs1501566	0.96[CEU][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs1501569	0.89[CEU][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap]
rs1539531	0.92[CEU][hapmap];0.86[YRI][hapmap]
rs17188748	0.88[CEU][hapmap]
rs1875435	0.82[JPT][hapmap];0.83[YRI][hapmap]
rs2221250	0.82[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2358214	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33985151	0.81[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs35711968	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4314946	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4638187	0.81[AFR][1000 genomes]
rs61850226	0.99[AFR][1000 genomes]
rs6669457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6678283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6697578	1.00[YRI][hapmap]
rs6702598	0.81[AFR][1000 genomes]
rs7414286	0.83[AFR][1000 genomes]
rs7517771	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7519090	0.91[AFR][1000 genomes]
rs7535286	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7536519	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2570583	chr1:211177091-211178674	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
2	chr1:211163800-211179400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211168000-211180600	Weak transcription	HSMM	muscle
4	chr1:211168000-211181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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