Variant report

Variant	rs10867613
Chromosome Location	chr9:72082970-72082971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10116203	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10121267	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10481753	1.00[ASW][hapmap];0.86[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs10867620	0.98[ASN][1000 genomes]
rs1412243	0.86[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs7032915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7033682	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7857219	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7869376	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs870693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870694	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037109	chr9:72040184-72120270	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430067	chr9:72080989-72116806	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72044200-72084400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:72045000-72084400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:72046400-72085600	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:72064600-72084200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:72064600-72084200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:72064800-72083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:72070800-72085600	Weak transcription	Gastric	stomach
8	chr9:72072400-72084000	Weak transcription	Fetal Heart	heart
9	chr9:72077200-72086800	Weak transcription	Fetal Brain Male	brain
10	chr9:72078400-72084000	Weak transcription	Placenta	Placenta
11	chr9:72079000-72084000	Weak transcription	HUVEC	blood vessel
12	chr9:72079000-72086400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:72079000-72091600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:72079200-72086200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:72079600-72083000	Strong transcription	Brain Inferior Temporal Lobe	brain
16	chr9:72079800-72085000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:72080000-72083000	Strong transcription	Brain Cingulate Gyrus	brain
18	chr9:72080200-72083200	Strong transcription	Brain Angular Gyrus	brain
19	chr9:72080400-72089400	Weak transcription	Fetal Thymus	thymus
20	chr9:72081000-72083600	Weak transcription	Adipose Nuclei	Adipose
21	chr9:72081200-72083000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:72081200-72087000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:72081400-72083000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:72081400-72084200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:72081400-72085600	Weak transcription	Left Ventricle	heart
26	chr9:72081600-72084600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:72081600-72090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:72081800-72083000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:72081800-72083200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:72081800-72085800	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:72081800-72086200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:72082000-72091000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:72082200-72090600	Weak transcription	Fetal Lung	lung
34	chr9:72082200-72091000	Weak transcription	Fetal Stomach	stomach
35	chr9:72082400-72083000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:72082400-72084000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:72082400-72084000	Weak transcription	Fetal Kidney	kidney
38	chr9:72082400-72085600	Weak transcription	Brain Anterior Caudate	brain
39	chr9:72082400-72090200	Weak transcription	Spleen	Spleen
40	chr9:72082400-72091200	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:72082600-72083000	ZNF genes & repeats	Pancreas	Pancrea
42	chr9:72082600-72084200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:72082600-72086600	Weak transcription	Fetal Brain Female	brain
44	chr9:72082800-72084400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:72082800-72085400	Weak transcription	Aorta	Aorta
46	chr9:72082800-72085600	Weak transcription	Ovary	ovary
47	chr9:72082800-72085800	Weak transcription	Brain Substantia Nigra	brain
48	chr9:72082800-72088000	Enhancers	Liver	Liver
49	chr9:72082800-72091000	Weak transcription	Esophagus	oesophagus
50	chr9:72082800-72091400	Weak transcription	Brain Germinal Matrix	brain

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