Variant report

Variant	rs10867825
Chromosome Location	chr9:72207376-72207377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72206293..72208868-chr9:72259741..72261828,2	MCF-7	breast:
2	chr9:72207158..72209032-chr9:72218092..72220343,2	MCF-7	breast:
3	chr9:72198561..72201116-chr9:72205878..72207439,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10123008	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10746682	0.95[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10780527	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10780528	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10780539	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10867828	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10867830	0.91[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs11139338	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs11139361	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11139511	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs12115441	0.86[CHB][hapmap]
rs1330334	0.86[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs1330336	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1411440	0.81[JPT][hapmap]
rs1556211	0.88[CEU][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1854702	0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1854703	0.88[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1967880	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1970017	0.91[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2026150	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2161056	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2309515	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744913	0.92[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744914	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744917	0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs4744918	0.91[ASN][1000 genomes]
rs4744919	0.90[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6559643	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7030393	0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7031694	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs72719029	0.91[ASN][1000 genomes]
rs7350265	0.88[ASN][1000 genomes]
rs7850006	0.80[ASN][1000 genomes]
rs7853783	0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7864173	0.82[ASN][1000 genomes]
rs7871895	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs869150	0.81[CHB][hapmap]
rs986352	0.83[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs987653	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72195800-72208200	Weak transcription	Fetal Lung	lung
3	chr9:72205400-72208200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:72205800-72207800	Enhancers	Brain Germinal Matrix	brain
5	chr9:72206200-72208200	Weak transcription	Fetal Brain Male	brain
6	chr9:72206200-72209000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:72206600-72208200	Weak transcription	Brain Anterior Caudate	brain
8	chr9:72206600-72208400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:72206600-72208800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:72206600-72209000	Weak transcription	Brain Angular Gyrus	brain
11	chr9:72206800-72208200	Weak transcription	Fetal Brain Female	brain
12	chr9:72206800-72209200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:72207000-72216600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:72207200-72207400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:72207200-72207400	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:72207200-72207400	Enhancers	Right Atrium	heart

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