Variant report

Variant	rs10867830
Chromosome Location	chr9:72225715-72225716
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10123008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10746682	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10780527	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs10780528	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs10780539	0.87[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867825	0.91[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs10867828	0.87[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11139338	0.92[CHB][hapmap]
rs11139361	0.84[CHB][hapmap]
rs11139511	0.95[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1330334	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1330336	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1411440	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1556211	0.92[CHB][hapmap]
rs1854702	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs1854703	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1967880	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs1970017	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs2026150	0.91[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2161056	0.82[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2309515	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744913	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs4744917	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs4744919	0.84[JPT][hapmap]
rs6559643	0.84[CHB][hapmap]
rs7030393	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7031694	0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7853783	0.92[CHB][hapmap]
rs986352	0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs987653	0.86[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
2	chr9:72219600-72226000	Weak transcription	Liver	Liver
3	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
4	chr9:72221200-72237200	Weak transcription	Ovary	ovary
5	chr9:72224000-72226200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:72224600-72225800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:72224600-72225800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:72224600-72226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:72224800-72226000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:72225000-72226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:72225200-72226200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:72225400-72226200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:72225400-72226600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:72225400-72226600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:72225600-72226600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links