Variant report

Variant	rs10872666
Chromosome Location	chr6:151018398-151018399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1552885	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1552888	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2345745	0.84[AMR][1000 genomes]
rs4869929	0.84[AMR][1000 genomes]
rs4869930	0.84[AMR][1000 genomes]
rs4869931	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs4869935	0.93[JPT][hapmap]
rs55646755	0.84[AMR][1000 genomes]
rs6921304	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929743	0.84[AMR][1000 genomes]
rs6940976	0.91[CEU][hapmap]
rs9478780	0.84[AMR][1000 genomes]
rs9478783	0.94[MEX][hapmap];0.84[AMR][1000 genomes]
rs9480531	0.95[MEX][hapmap];0.84[AMR][1000 genomes]
rs9480533	0.87[AMR][1000 genomes]
rs9480548	0.93[JPT][hapmap]
rs9480550	0.93[JPT][hapmap]
rs9480551	0.93[JPT][hapmap]
rs9885650	0.83[AMR][1000 genomes]
rs9885699	0.86[AMR][1000 genomes]
rs9885836	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151005800-151018400	Weak transcription	Psoas Muscle	Psoas
2	chr6:151006000-151018400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:151009000-151018400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:151009000-151021200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:151009800-151018600	Weak transcription	Ovary	ovary
6	chr6:151012200-151018400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:151012200-151023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:151012400-151018400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:151013000-151020600	Enhancers	Primary B cells from cord blood	blood
10	chr6:151013200-151018600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:151014600-151021000	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:151015000-151018400	Weak transcription	Placenta	Placenta
13	chr6:151015000-151020600	Weak transcription	Left Ventricle	heart
14	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
15	chr6:151015400-151018800	Weak transcription	GM12878-XiMat	blood
16	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:151016800-151019400	Enhancers	Brain Substantia Nigra	brain
18	chr6:151017000-151018400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:151017000-151018800	Enhancers	Adipose Nuclei	Adipose
20	chr6:151017200-151018800	Enhancers	Fetal Muscle Leg	muscle
21	chr6:151017200-151019000	Enhancers	Fetal Stomach	stomach
22	chr6:151017400-151019000	Genic enhancers	Thymus	Thymus
23	chr6:151017400-151020600	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:151017600-151018400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:151017600-151018800	Strong transcription	Fetal Thymus	thymus
26	chr6:151017600-151023800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:151017600-151029200	Weak transcription	Lung	lung
28	chr6:151017800-151018400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:151017800-151025200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:151017800-151025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:151017800-151027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:151018000-151018600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:151018200-151019000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:151018200-151019000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:151018200-151019000	Enhancers	Spleen	Spleen
36	chr6:151018200-151019200	Enhancers	Small Intestine	intestine
37	chr6:151018200-151019600	Enhancers	Liver	Liver

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