Variant report

Variant	rs10873189
Chromosome Location	chr14:65713564-65713565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65711767..65715817-chr14:65877100..65880952,4	MCF-7	breast:
2	chr14:65709528..65711067-chr14:65712244..65714160,2	MCF-7	breast:
3	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
4	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
5	chr14:65708249..65716123-chr14:65876687..65882798,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10149000	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158584	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158585	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12100912	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12433861	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12436594	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12436640	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12588892	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12588894	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12588943	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1679885	0.84[EUR][1000 genomes]
rs28850312	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28853652	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61987801	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
3	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:65707000-65716200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65708400-65716200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:65708400-65716200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:65710800-65716800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:65711000-65716200	Weak transcription	Pancreas	Pancrea
9	chr14:65711200-65716200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:65711200-65717000	Weak transcription	Osteobl	bone
11	chr14:65711200-65719000	Weak transcription	Hela-S3	cervix
12	chr14:65711400-65717000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:65711600-65716000	Weak transcription	HepG2	liver
14	chr14:65711600-65722600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:65712800-65716000	Weak transcription	HUVEC	blood vessel
16	chr14:65712800-65716400	Weak transcription	A549	lung
17	chr14:65712800-65721600	Weak transcription	Primary T cells from cord blood	blood
18	chr14:65713000-65716000	Weak transcription	Stomach Mucosa	stomach
19	chr14:65713000-65722400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr14:65713200-65718400	Weak transcription	H9 Cell Line	embryonic stem cell

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