Variant report

Variant	rs10873703
Chromosome Location	chr1:85940450-85940451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85939910..85941897-chr1:85943052..85945957,2	MCF-7	breast:
2	chr1:85930255..85933198-chr1:85937811..85940494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153904	Chromatin interaction
ENSG00000273264	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10747318	0.81[JPT][hapmap]
rs10873701	0.80[JPT][hapmap]
rs12032315	0.83[ASN][1000 genomes]
rs12034249	0.81[JPT][hapmap]
rs12044882	0.86[ASN][1000 genomes]
rs1357635	0.81[JPT][hapmap]
rs17384213	0.81[JPT][hapmap]
rs2016104	0.81[JPT][hapmap]
rs2300633	0.80[JPT][hapmap]
rs539714	0.80[JPT][hapmap]
rs600098	0.87[JPT][hapmap]
rs7515261	0.81[JPT][hapmap]
rs7555670	0.81[JPT][hapmap]
rs990916	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85931200-85941600	Weak transcription	Aorta	Aorta
2	chr1:85931200-85942200	Weak transcription	Esophagus	oesophagus
3	chr1:85931800-85942400	Weak transcription	NHLF	lung
4	chr1:85931800-85956000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:85931800-85960000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:85932000-85961400	Weak transcription	Fetal Stomach	stomach
7	chr1:85932200-85945400	Weak transcription	HUVEC	blood vessel
8	chr1:85933000-85943200	Strong transcription	HSMM	muscle
9	chr1:85933600-85943400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:85933800-85950200	Weak transcription	NHDF-Ad	bronchial
11	chr1:85934000-85950000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:85939200-85940600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:85939400-85940800	Genic enhancers	Osteobl	bone
14	chr1:85939400-85943000	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr1:85939600-85946800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:85939800-85945400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:85939800-85950200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:85940000-85940600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:85940000-85940800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:85940200-85943000	Strong transcription	NH-A	brain
21	chr1:85940200-85956400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:85940400-85942000	Weak transcription	HSMMtube	muscle

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