Variant report

Variant	rs10875349
Chromosome Location	chr1:92765102-92765103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:92763990-92765122	PFSK-1	brain:	n/a	n/a
2	MXI1	chr1:92764030-92765365	Hela-S3	cervix:	n/a	n/a
3	ELF1	chr1:92764101-92765158	GM12878	blood:	n/a	n/a
4	POLR2A	chr1:92763434-92766187	MCF10A-Er-Src	breast:	n/a	n/a
5	ZNF263	chr1:92764065-92765204	HEK293-T-REx	kidney:	n/a	n/a
6	RCOR1	chr1:92763795-92765147	Hela-S3	cervix:	n/a	n/a
7	MAZ	chr1:92763963-92765119	IMR90	lung:	n/a	n/a
8	MAZ	chr1:92763939-92765208	K562	blood:	n/a	n/a
9	SMARCB1	chr1:92764081-92765170	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr1:92763986-92765127	Raji	blood:	n/a	n/a
11	POLR2A	chr1:92764001-92765122	Hela-S3	cervix:	n/a	n/a
12	MAX	chr1:92764079-92765135	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr1:92763979-92765127	PBDE	blood:	n/a	n/a
14	BCLAF1	chr1:92764017-92765143	GM12878	blood:	n/a	chr1:92764418-92764427
15	POLR2A	chr1:92763989-92765193	K562	blood:	n/a	n/a
16	GTF2F1	chr1:92764000-92765136	Hela-S3	cervix:	n/a	n/a
17	MAX	chr1:92763995-92765177	K562	blood:	n/a	n/a
18	POLR2A	chr1:92763776-92765381	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr1:92763945-92765535	GM12891	blood:	n/a	n/a
20	MXI1	chr1:92763763-92765147	IMR90	lung:	n/a	n/a
21	WRNIP1	chr1:92764763-92765102	GM12878	blood:	n/a	n/a
22	CREB1	chr1:92764028-92765116	HepG2	liver:	n/a	n/a
23	MXI1	chr1:92763179-92765794	SK-N-SH	brain:	n/a	n/a
24	GTF2F1	chr1:92764159-92765220	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr1:92763961-92765568	MCF10A-Er-Src	breast:	n/a	n/a
26	TAF1	chr1:92764039-92765124	ECC-1	luminal epithelium:	n/a	n/a
27	CHD1	chr1:92763931-92765499	GM12878	blood:	n/a	n/a
28	POLR2A	chr1:92764054-92765573	IMR90	lung:	n/a	n/a
29	YY1	chr1:92764060-92765178	SK-N-SH	brain:	n/a	chr1:92764545-92764559
30	POLR2A	chr1:92763973-92765105	GM18505	blood:	n/a	n/a
31	POLR2A	chr1:92764046-92765125	H1-hESC	embryonic stem cell:	n/a	n/a
32	YY1	chr1:92764054-92765153	GM12878	blood:	n/a	chr1:92764545-92764559
33	RFX5	chr1:92763816-92765287	Hela-S3	cervix:	n/a	n/a
34	REST	chr1:92763778-92765444	H1-neurons	neurons:	n/a	chr1:92764843-92764856
35	POLR2A	chr1:92764030-92765177	HepG2	liver:	n/a	n/a
36	SIN3A	chr1:92763873-92765243	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr1:92763896-92765122	HL-60	blood:	n/a	n/a
38	POLR2A	chr1:92763987-92765199	H1-neurons	neurons:	n/a	n/a
39	POLR2A	chr1:92763894-92765348	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:92494741..92496705-chr1:92764193..92766152,2	MCF-7	breast:
2	chr1:92762794..92765730-chr1:93295925..93298205,3	K562	blood:
3	chr1:92751701..92754444-chr1:92763776..92766491,2	MCF-7	breast:
4	chr1:92764074..92765656-chr1:93296705..93299037,2	K562	blood:
5	chr1:92764662..92766279-chr1:92768201..92769903,2	MCF-7	breast:
6	chr1:92751144..92752872-chr1:92762540..92765121,2	K562	blood:

No data

Variant related genes	Relation type
GLMN	TF binding region
ENSG00000174842	Chromatin interaction
ENSG00000172031	Chromatin interaction
ENSG00000122406	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10159094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10747503	0.80[ASN][1000 genomes]
rs10875204	1.00[CHD][hapmap]
rs10875209	1.00[JPT][hapmap]
rs10875214	1.00[JPT][hapmap]
rs10875319	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164226	0.90[ASN][1000 genomes]
rs11164288	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164312	0.90[ASN][1000 genomes]
rs11164349	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11164546	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1157470	1.00[JPT][hapmap]
rs11577572	1.00[JPT][hapmap]
rs11577839	0.90[ASN][1000 genomes]
rs11578012	0.90[ASN][1000 genomes]
rs11578400	0.90[ASN][1000 genomes]
rs11585255	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11586989	0.80[ASN][1000 genomes]
rs11588044	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11588153	1.00[JPT][hapmap]
rs11589858	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11803383	0.84[EUR][1000 genomes]
rs11803457	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024731	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12086394	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094293	0.90[ASN][1000 genomes]
rs12119246	1.00[JPT][hapmap]
rs1226183	1.00[JPT][hapmap]
rs1226187	1.00[JPT][hapmap]
rs12401372	0.90[ASN][1000 genomes]
rs12404806	1.00[JPT][hapmap]
rs12407622	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12727665	0.90[ASN][1000 genomes]
rs12729867	1.00[JPT][hapmap]
rs12731923	0.90[ASN][1000 genomes]
rs12735898	0.90[ASN][1000 genomes]
rs12740246	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12755781	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12757533	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1483022	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1487536	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487540	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519972	1.00[JPT][hapmap]
rs1809606	0.90[ASN][1000 genomes]
rs1872007	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1982720	1.00[JPT][hapmap]
rs2004814	0.90[ASN][1000 genomes]
rs2046620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2087194	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2093879	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2391114	1.00[JPT][hapmap]
rs2391158	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2391161	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2391162	0.90[ASN][1000 genomes]
rs2839877	1.00[JPT][hapmap]
rs2893200	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3103170	0.82[EUR][1000 genomes]
rs3103176	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3103178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3118137	0.80[ASN][1000 genomes]
rs3122321	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3122323	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3122325	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3122327	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3131813	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131814	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131820	0.92[CEU][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap]
rs3131827	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131828	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34090353	0.90[ASN][1000 genomes]
rs35580949	0.90[ASN][1000 genomes]
rs3851271	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3851272	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3851273	1.00[JPT][hapmap]
rs3929737	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4393167	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414050	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437922	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4658128	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4658290	1.00[JPT][hapmap]
rs4658294	1.00[JPT][hapmap]
rs4658298	1.00[JPT][hapmap]
rs4658299	1.00[JPT][hapmap]
rs4658300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488849	1.00[JPT][hapmap]
rs490800	1.00[JPT][hapmap]
rs492164	1.00[JPT][hapmap]
rs493595	1.00[JPT][hapmap]
rs4949888	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4970699	0.90[ASN][1000 genomes]
rs4970713	0.90[ASN][1000 genomes]
rs504606	1.00[JPT][hapmap]
rs506375	1.00[JPT][hapmap]
rs511546	1.00[JPT][hapmap]
rs515280	1.00[JPT][hapmap]
rs519932	1.00[JPT][hapmap]
rs527412	1.00[JPT][hapmap]
rs547699	1.00[JPT][hapmap]
rs553861	1.00[JPT][hapmap]
rs556980	1.00[JPT][hapmap]
rs563113	1.00[JPT][hapmap]
rs569593	1.00[JPT][hapmap]
rs570368	1.00[JPT][hapmap]
rs573044	1.00[JPT][hapmap]
rs575805	1.00[JPT][hapmap]
rs6603962	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603971	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6604080	1.00[JPT][hapmap]
rs6604082	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6604088	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604090	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661384	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662379	0.90[ASN][1000 genomes]
rs6663114	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6663118	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6663278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663905	0.90[ASN][1000 genomes]
rs6668803	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689366	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6692287	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6702267	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720457	0.90[ASN][1000 genomes]
rs733012	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745793	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517541	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518974	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520275	0.96[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524120	0.90[ASN][1000 genomes]
rs7533077	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7539757	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7542358	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7542373	1.00[JPT][hapmap]
rs7543947	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545076	1.00[JPT][hapmap]
rs7550680	0.90[ASN][1000 genomes]
rs7554154	0.83[EUR][1000 genomes]
rs912794	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9439911	0.90[ASN][1000 genomes]
rs9440085	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs981583	1.00[JPT][hapmap]
rs9943178	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv870667	chr1:92697188-92813741	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv871352	chr1:92761127-92807238	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv870854	chr1:92765102-92807238	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv871387	chr1:92765102-92813741	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92762800-92767200	Active TSS	GM12878-XiMat	blood
2	chr1:92763200-92765400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:92763200-92765400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:92763200-92765400	Active TSS	HMEC	breast
5	chr1:92763200-92765800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:92763200-92765800	Active TSS	A549	lung
7	chr1:92763200-92766200	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr1:92763200-92766800	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr1:92763400-92765200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:92763400-92765200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:92763400-92765200	Active TSS	Brain Angular Gyrus	brain
12	chr1:92763400-92765200	Active TSS	NHEK	skin
13	chr1:92763400-92765400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:92763400-92765400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:92763400-92765400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:92763400-92765400	Active TSS	K562	blood
17	chr1:92763400-92765800	Active TSS	H1 Cell Line	embryonic stem cell
18	chr1:92763400-92765800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:92763400-92765800	Active TSS	HepG2	liver
20	chr1:92763400-92766000	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr1:92763600-92765200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr1:92763600-92765200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:92763600-92765200	Active TSS	Muscle Satellite Cultured Cells	--
24	chr1:92763600-92765200	Active TSS	Colon Smooth Muscle	Colon
25	chr1:92763600-92765200	Active TSS	Duodenum Mucosa	Duodenum
26	chr1:92763600-92765200	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr1:92763600-92765200	Active TSS	Fetal Heart	heart
28	chr1:92763600-92765200	Active TSS	Fetal Kidney	kidney
29	chr1:92763600-92765200	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr1:92763600-92765200	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr1:92763600-92765200	Active TSS	Hela-S3	cervix
32	chr1:92763600-92765200	Active TSS	NH-A	brain
33	chr1:92763600-92765200	Active TSS	NHLF	lung
34	chr1:92763600-92765200	Active TSS	Osteobl	bone
35	chr1:92763600-92765400	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr1:92763600-92765400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr1:92763600-92765400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:92763600-92765400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:92763600-92765400	Active TSS	Fetal Brain Female	brain
40	chr1:92763600-92765400	Active TSS	Stomach Smooth Muscle	stomach
41	chr1:92763600-92765400	Active TSS	NHDF-Ad	bronchial
42	chr1:92763600-92765800	Active TSS	Fetal Intestine Large	intestine
43	chr1:92763800-92765200	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr1:92763800-92765200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:92763800-92765200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:92763800-92765200	Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr1:92763800-92765200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:92763800-92765200	Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr1:92763800-92765200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:92763800-92765200	Active TSS	Primary T killer memory cells from peripheral blood	blood

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