Variant report

Variant	rs10876067
Chromosome Location	chr12:50990850-50990851
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50990321..50993026-chr12:51018006..51020008,2	K562	blood:
2	chr12:50975463..50977998-chr12:50988989..50993005,3	K562	blood:
3	chr12:50896574..50899072-chr12:50989675..50992643,3	K562	blood:
4	chr12:50984762..50986621-chr12:50989741..50991537,2	K562	blood:
5	chr12:50990408..50992631-chr12:51008278..51009960,2	K562	blood:

Variant related genes	Relation type
ENSG00000066084	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1003033	0.82[CEU][hapmap]
rs10431535	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10444547	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10459233	0.84[CEU][hapmap]
rs10459234	0.81[AMR][1000 genomes]
rs10459235	0.81[AMR][1000 genomes]
rs10506294	0.84[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs10506295	0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs10747584	0.83[ASN][1000 genomes]
rs10747585	0.84[ASN][1000 genomes]
rs10747587	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs10783369	0.80[ASN][1000 genomes]
rs10783372	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs10783373	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10783374	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10783378	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10783381	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10783382	0.84[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes]
rs10876047	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs10876051	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10876052	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs10876053	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10876056	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10876058	0.82[ASN][1000 genomes]
rs10876060	0.82[ASN][1000 genomes]
rs10876061	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs10876063	0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10876065	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10876068	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10876070	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10876071	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10876072	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10876073	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10876075	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10876076	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11169479	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11169481	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11169483	0.80[ASN][1000 genomes]
rs11169493	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs11169498	0.82[ASN][1000 genomes]
rs11169505	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11169507	0.84[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11169515	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11169532	0.84[CEU][hapmap]
rs11613488	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11615933	0.81[AMR][1000 genomes]
rs12230242	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12231309	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12231317	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12580051	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12582712	0.82[ASN][1000 genomes]
rs12809086	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs12827022	0.82[ASN][1000 genomes]
rs17124930	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs3893353	0.82[ASN][1000 genomes]
rs3935869	0.82[ASN][1000 genomes]
rs4131769	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4238106	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4238107	0.80[ASN][1000 genomes]
rs4238108	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs4516034	0.82[ASN][1000 genomes]
rs4768850	0.81[ASN][1000 genomes]
rs4768852	0.82[ASN][1000 genomes]
rs4768853	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4768858	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4768888	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs4768889	0.80[ASN][1000 genomes]
rs4768890	0.80[ASN][1000 genomes]
rs4768892	0.82[ASN][1000 genomes]
rs4768893	0.84[CHB][hapmap]
rs4768895	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4768899	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4768903	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4768907	0.84[CEU][hapmap]
rs4768975	0.84[CEU][hapmap]
rs55877451	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61926275	0.81[AMR][1000 genomes]
rs7134976	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7138604	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs7305375	0.84[CEU][hapmap]
rs7307419	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7956591	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.82[ASN][1000 genomes]
rs876078	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs876079	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs952318	0.84[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9788159	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1816169	chr12:50973897-51002088	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1817171	chr12:50973897-51002088	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1821299	chr12:50973897-51002088	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1822840	chr12:50973897-51015509	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50967400-50991200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:50967400-50991200	Weak transcription	Aorta	Aorta
3	chr12:50968800-50997400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:50969600-50997400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:50974000-51011800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr12:50975600-50991200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:50975800-50991400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:50976000-50993400	Weak transcription	Fetal Lung	lung
9	chr12:50976200-50991200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:50978000-50991200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:50979200-50991200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr12:50979200-51013800	Weak transcription	Fetal Stomach	stomach
13	chr12:50979400-50991200	Weak transcription	Right Ventricle	heart
14	chr12:50979400-50991600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:50979400-50997200	Weak transcription	Pancreas	Pancrea
16	chr12:50979400-50997200	Weak transcription	Spleen	Spleen
17	chr12:50979600-50991400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr12:50979800-50991000	Weak transcription	A549	lung
19	chr12:50980000-50991200	Weak transcription	Primary B cells from cord blood	blood
20	chr12:50981400-50991200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr12:50981400-50997400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:50981800-50991200	Weak transcription	Liver	Liver
23	chr12:50983600-50991000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:50983600-50991200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:50983600-50991200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr12:50983600-50991200	Weak transcription	NHLF	lung
27	chr12:50983600-50991600	Weak transcription	HSMMtube	muscle
28	chr12:50983800-50991000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:50983800-50991200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr12:50983800-50991200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr12:50983800-50991200	Weak transcription	GM12878-XiMat	blood
32	chr12:50983800-50991400	Weak transcription	Adipose Nuclei	Adipose
33	chr12:50984000-50991000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr12:50984000-50991000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:50984000-50991200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr12:50984000-50991200	Weak transcription	Primary T cells from cord blood	blood
37	chr12:50984000-50991200	Weak transcription	NH-A	brain
38	chr12:50984000-50991400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr12:50984200-50991000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:50984200-50991200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr12:50984200-50991200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr12:50985000-50991200	Weak transcription	Placenta	Placenta
43	chr12:50986800-50991200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr12:50987800-50991200	Weak transcription	HSMM	muscle
45	chr12:50987800-50991400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:50988000-50991200	Weak transcription	Ovary	ovary
47	chr12:50988200-50991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:50988800-50991200	Enhancers	Brain Cingulate Gyrus	brain
49	chr12:50988800-50994200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr12:50989400-50991200	Weak transcription	Brain Inferior Temporal Lobe	brain

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