Variant report

Variant	rs10876073
Chromosome Location	chr12:51025910-51025911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50560617..50562645-chr12:51025558..51027180,2	K562	blood:
2	chr12:51015875..51020257-chr12:51020735..51026058,6	MCF-7	breast:
3	chr12:51022477..51026896-chr12:51028497..51032139,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139624	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1003033	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10431486	0.91[EUR][1000 genomes]
rs10431535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10444547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10459233	0.87[EUR][1000 genomes]
rs10459234	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10459235	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10506294	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10506295	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10747584	0.87[EUR][1000 genomes]
rs10747585	0.91[EUR][1000 genomes]
rs10747587	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10783369	0.90[EUR][1000 genomes]
rs10783370	0.91[EUR][1000 genomes]
rs10783371	0.91[EUR][1000 genomes]
rs10783372	0.91[EUR][1000 genomes]
rs10783373	0.89[EUR][1000 genomes]
rs10783374	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783378	0.91[EUR][1000 genomes]
rs10783381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783382	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783383	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10783384	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876042	0.87[EUR][1000 genomes]
rs10876043	0.88[EUR][1000 genomes]
rs10876047	0.91[EUR][1000 genomes]
rs10876051	0.90[EUR][1000 genomes]
rs10876052	0.90[EUR][1000 genomes]
rs10876053	0.91[EUR][1000 genomes]
rs10876056	0.89[EUR][1000 genomes]
rs10876058	0.91[EUR][1000 genomes]
rs10876060	0.89[EUR][1000 genomes]
rs10876061	0.91[EUR][1000 genomes]
rs10876063	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876065	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876067	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10876068	0.86[AMR][1000 genomes]
rs10876070	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876071	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876072	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876075	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10876076	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11169479	0.91[EUR][1000 genomes]
rs11169480	0.91[EUR][1000 genomes]
rs11169481	0.89[EUR][1000 genomes]
rs11169483	0.85[EUR][1000 genomes]
rs11169487	0.91[EUR][1000 genomes]
rs11169493	0.90[EUR][1000 genomes]
rs11169498	0.88[EUR][1000 genomes]
rs11169505	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11169507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169515	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169528	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169532	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169537	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169538	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11169539	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11613488	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11615933	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12230242	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12231309	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12231317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12580051	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12580479	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12582712	0.91[EUR][1000 genomes]
rs12809086	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12827022	0.88[EUR][1000 genomes]
rs17124930	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2243571	0.86[EUR][1000 genomes]
rs2684908	0.82[EUR][1000 genomes]
rs2700478	0.87[EUR][1000 genomes]
rs34867510	0.87[EUR][1000 genomes]
rs35845404	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3742063	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3742064	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3825402	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3893353	0.91[EUR][1000 genomes]
rs3935869	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4131769	0.91[EUR][1000 genomes]
rs4238106	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4238107	1.00[ASN][1000 genomes]
rs4238108	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4516034	0.91[EUR][1000 genomes]
rs4768850	0.91[EUR][1000 genomes]
rs4768852	0.89[EUR][1000 genomes]
rs4768853	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768858	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4768884	0.91[EUR][1000 genomes]
rs4768888	0.91[EUR][1000 genomes]
rs4768889	0.91[EUR][1000 genomes]
rs4768890	0.80[EUR][1000 genomes]
rs4768892	0.91[EUR][1000 genomes]
rs4768893	0.91[EUR][1000 genomes]
rs4768895	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768899	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4768904	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4768906	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768907	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768911	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4768912	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768913	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768914	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55680342	0.89[EUR][1000 genomes]
rs55877451	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61926275	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7134976	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7138604	0.91[EUR][1000 genomes]
rs7305375	0.86[EUR][1000 genomes]
rs7307419	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7956591	0.91[EUR][1000 genomes]
rs876078	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876079	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876080	0.86[EUR][1000 genomes]
rs952318	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10876073	DIP2B	cis	Thyroid	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51014400-51030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:51015000-51027600	Weak transcription	NHDF-Ad	bronchial
5	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
6	chr12:51016000-51027600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:51016000-51028200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:51016000-51030400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:51016000-51030600	Weak transcription	Psoas Muscle	Psoas
10	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
11	chr12:51016200-51030400	Weak transcription	Brain Germinal Matrix	brain
12	chr12:51016200-51035400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:51016600-51039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:51017000-51027600	Weak transcription	NHEK	skin
15	chr12:51017800-51042800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:51018800-51027800	Weak transcription	Left Ventricle	heart
17	chr12:51019400-51028200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr12:51019600-51030000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr12:51019600-51031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr12:51019600-51031200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:51019800-51030400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr12:51019800-51031400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr12:51020000-51026200	Strong transcription	Fetal Thymus	thymus
25	chr12:51020000-51028000	Weak transcription	Fetal Heart	heart
26	chr12:51020000-51031400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr12:51020200-51026200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:51020200-51028200	Weak transcription	Colon Smooth Muscle	Colon
29	chr12:51020200-51030400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:51020400-51026400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:51020400-51026600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:51020400-51026800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr12:51020400-51027600	Weak transcription	Osteobl	bone
34	chr12:51020400-51028200	Weak transcription	Small Intestine	intestine
35	chr12:51020600-51026000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr12:51020800-51026200	Strong transcription	Fetal Stomach	stomach
37	chr12:51020800-51027600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr12:51020800-51028200	Weak transcription	Stomach Mucosa	stomach
39	chr12:51021000-51026000	Strong transcription	Fetal Intestine Large	intestine
40	chr12:51021000-51030600	Weak transcription	HUVEC	blood vessel
41	chr12:51021000-51039800	Weak transcription	NHLF	lung
42	chr12:51021400-51028000	Weak transcription	Gastric	stomach
43	chr12:51021600-51029200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr12:51021600-51031000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr12:51021600-51031400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr12:51021600-51041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr12:51021800-51027400	Weak transcription	Brain Anterior Caudate	brain
48	chr12:51021800-51027600	Weak transcription	NH-A	brain
49	chr12:51021800-51027800	Weak transcription	Brain Angular Gyrus	brain
50	chr12:51021800-51027800	Weak transcription	Brain Substantia Nigra	brain

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