Variant report

Variant	rs10876158
Chromosome Location	chr12:51659071-51659072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51659052..51661518-chr12:51662448..51664398,3	MCF-7	breast:
2	chr12:51651947..51654045-chr12:51655444..51659174,3	K562	blood:
3	chr12:51658184..51660274-chr12:51733778..51735476,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170545	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11169753	1.00[EUR][1000 genomes]
rs12297981	1.00[EUR][1000 genomes]
rs12304834	1.00[EUR][1000 genomes]
rs12310188	1.00[EUR][1000 genomes]
rs12310717	1.00[EUR][1000 genomes]
rs12321105	1.00[EUR][1000 genomes]
rs2359600	1.00[EUR][1000 genomes]
rs2359601	1.00[EUR][1000 genomes]
rs2359602	1.00[EUR][1000 genomes]
rs3951439	1.00[EUR][1000 genomes]
rs57341229	1.00[EUR][1000 genomes]
rs6580825	1.00[EUR][1000 genomes]
rs7134300	1.00[EUR][1000 genomes]
rs7134437	1.00[EUR][1000 genomes]
rs7134808	1.00[EUR][1000 genomes]
rs7138157	1.00[EUR][1000 genomes]
rs7297398	1.00[EUR][1000 genomes]
rs7301520	1.00[EUR][1000 genomes]
rs7342309	1.00[EUR][1000 genomes]
rs7486892	1.00[EUR][1000 genomes]
rs7488776	1.00[EUR][1000 genomes]
rs7971653	1.00[EUR][1000 genomes]
rs7979358	1.00[EUR][1000 genomes]
rs7980682	1.00[EUR][1000 genomes]
rs7980927	1.00[EUR][1000 genomes]
rs9804923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv482304	chr12:51653496-51814917	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51638400-51662800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:51639800-51662800	Weak transcription	Fetal Stomach	stomach
3	chr12:51640200-51662800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:51640200-51662800	Weak transcription	Pancreas	Pancrea
5	chr12:51640400-51661600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr12:51640600-51661800	Weak transcription	NH-A	brain
7	chr12:51641600-51663000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:51642000-51662800	Weak transcription	NHLF	lung
9	chr12:51642200-51661000	Weak transcription	Colonic Mucosa	Colon
10	chr12:51642200-51662800	Weak transcription	Gastric	stomach
11	chr12:51642200-51662800	Weak transcription	Right Ventricle	heart
12	chr12:51642200-51663000	Weak transcription	Lung	lung
13	chr12:51642400-51659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:51642400-51662800	Weak transcription	Primary B cells from cord blood	blood
15	chr12:51642600-51659200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr12:51642600-51659800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr12:51642600-51662600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr12:51643000-51662600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr12:51643200-51662800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr12:51644800-51659200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr12:51645200-51661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:51647800-51659200	Weak transcription	Placenta	Placenta
23	chr12:51648800-51662600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:51649400-51661400	Weak transcription	Esophagus	oesophagus
25	chr12:51649400-51662800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr12:51649600-51659400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:51651000-51662800	Weak transcription	Liver	Liver
28	chr12:51651200-51659200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr12:51651200-51660200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr12:51651400-51662800	Weak transcription	Fetal Intestine Large	intestine
31	chr12:51653400-51663400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr12:51654200-51662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:51656800-51660000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr12:51656800-51662800	Weak transcription	Ovary	ovary
35	chr12:51656800-51662800	Weak transcription	Spleen	Spleen
36	chr12:51657000-51660800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr12:51657000-51661600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr12:51657000-51662200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr12:51657000-51662800	Weak transcription	Adipose Nuclei	Adipose
40	chr12:51657000-51662800	Weak transcription	A549	lung
41	chr12:51657200-51662800	Weak transcription	Hela-S3	cervix
42	chr12:51657400-51660000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr12:51657400-51661600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:51657400-51661600	Weak transcription	HSMM	muscle
45	chr12:51657400-51661800	Weak transcription	Osteobl	bone
46	chr12:51657600-51661600	Weak transcription	HUVEC	blood vessel
47	chr12:51657600-51661600	Weak transcription	NHDF-Ad	bronchial
48	chr12:51657600-51662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr12:51658000-51660800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:51658000-51662600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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