Variant report

Variant	rs10877837
Chromosome Location	chr12:40352614-40352615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:40158540..40159495-chr12:40351942..40352752,5	MCF-7	breast:
2	chr12:40218165..40218758-chr12:40352165..40352674,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10506145	1.00[JPT][hapmap]
rs1086490	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10877823	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs10877832	0.89[YRI][hapmap]
rs11174315	0.87[YRI][hapmap]
rs11174338	0.89[YRI][hapmap]
rs11174370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs11174427	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174532	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11174533	0.93[EUR][1000 genomes]
rs11174536	0.80[EUR][1000 genomes]
rs11514248	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11559994	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs11564133	1.00[JPT][hapmap]
rs11564139	1.00[JPT][hapmap]
rs11564160	1.00[JPT][hapmap]
rs11564221	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11564223	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11564282	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11564285	0.89[YRI][hapmap]
rs12230558	0.89[YRI][hapmap]
rs12312535	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12371119	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12810368	1.00[JPT][hapmap]
rs12827948	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap]
rs17442304	1.00[JPT][hapmap]
rs17442469	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17442756	1.00[JPT][hapmap]
rs17483628	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17559478	1.00[JPT][hapmap]
rs2046929	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2404346	0.82[ASN][1000 genomes]
rs2404574	1.00[JPT][hapmap]
rs28370600	0.89[YRI][hapmap]
rs28370607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370644	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28370654	0.82[ASN][1000 genomes]
rs28370656	1.00[JPT][hapmap]
rs28370659	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28370681	0.82[ASN][1000 genomes]
rs28370692	1.00[YRI][hapmap]
rs28370728	0.89[YRI][hapmap]
rs28740188	0.82[ASN][1000 genomes]
rs28740190	1.00[YRI][hapmap]
rs4399379	1.00[JPT][hapmap]
rs55707305	0.82[ASN][1000 genomes]
rs7297783	0.89[YRI][hapmap]
rs7306718	1.00[JPT][hapmap]
rs7316296	0.89[YRI][hapmap]
rs73280629	0.86[EUR][1000 genomes]
rs7484475	1.00[JPT][hapmap]
rs7960023	0.87[AFR][1000 genomes]
rs7969495	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7974972	1.00[JPT][hapmap]
rs992851	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:40347800-40369800	Weak transcription	Pancreas	Pancrea
3	chr12:40348200-40361400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:40352400-40354400	Enhancers	Cortex derived primary cultured neurospheres	brain

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