Variant report

Variant	rs10877911
Chromosome Location	chr12:63128144-63128145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63125401..63128533-chr12:63129737..63133107,4	K562	blood:
2	chr12:63124937..63127215-chr12:63127798..63129812,2	MCF-7	breast:
3	chr12:63124938..63126859-chr12:63127392..63129677,2	K562	blood:
4	chr12:63125401..63128193-chr12:63129973..63133107,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11174620	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs11174621	0.87[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11174626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315418	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17734018	0.85[CEU][hapmap]
rs7135080	0.81[CHB][hapmap]
rs7295577	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7308302	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7312352	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7954555	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7970056	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10877911	ARHGAP9	cis	parietal	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63114000-63129400	Weak transcription	Liver	Liver
3	chr12:63120000-63131600	Weak transcription	Thymus	Thymus
4	chr12:63121800-63128200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:63121800-63133200	Strong transcription	HepG2	liver
6	chr12:63123000-63152000	Weak transcription	Gastric	stomach
7	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr12:63123600-63131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:63123600-63131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:63123600-63132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:63124200-63131600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:63124200-63131800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr12:63124400-63131200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:63124400-63131600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr12:63124400-63131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:63124600-63129400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:63124600-63132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:63125200-63132400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:63125400-63132200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr12:63125600-63128600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:63125600-63128600	Enhancers	NHDF-Ad	bronchial
23	chr12:63125600-63138400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:63125800-63130000	Weak transcription	Fetal Brain Female	brain
25	chr12:63125800-63131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:63125800-63132200	Weak transcription	Brain Substantia Nigra	brain
27	chr12:63125800-63133600	Weak transcription	Fetal Kidney	kidney
28	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas
29	chr12:63126000-63129200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:63126000-63129400	Weak transcription	Fetal Intestine Large	intestine
31	chr12:63126000-63132000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr12:63126000-63132400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr12:63126000-63132800	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:63126000-63133000	Weak transcription	Brain Anterior Caudate	brain
35	chr12:63126000-63133000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr12:63126000-63133600	Weak transcription	Adipose Nuclei	Adipose
37	chr12:63126000-63138400	Weak transcription	Left Ventricle	heart
38	chr12:63126000-63149200	Weak transcription	Lung	lung
39	chr12:63126200-63129400	Weak transcription	Placenta	Placenta
40	chr12:63126200-63130200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr12:63126200-63131000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr12:63126200-63132400	Weak transcription	Ovary	ovary
43	chr12:63126200-63133000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr12:63126200-63133200	Weak transcription	Fetal Stomach	stomach
45	chr12:63126200-63133200	Weak transcription	Right Atrium	heart
46	chr12:63126200-63138600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:63126200-63155600	Weak transcription	Aorta	Aorta
48	chr12:63126400-63128400	Weak transcription	Fetal Intestine Small	intestine
49	chr12:63126400-63131200	Weak transcription	Fetal Muscle Leg	muscle
50	chr12:63126400-63132000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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