Variant report

Variant	rs10885657
Chromosome Location	chr10:116893777-116893778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1010610	0.80[EUR][1000 genomes]
rs10885649	0.80[EUR][1000 genomes]
rs10885651	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885655	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885658	0.85[EUR][1000 genomes]
rs10885659	0.82[EUR][1000 genomes]
rs10885660	0.82[EUR][1000 genomes]
rs10885662	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885664	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885669	0.87[ASN][1000 genomes]
rs10885672	0.87[ASN][1000 genomes]
rs10885673	0.80[EUR][1000 genomes]
rs10885676	0.84[ASN][1000 genomes]
rs10885677	0.81[ASN][1000 genomes]
rs11197066	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197071	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197081	0.85[EUR][1000 genomes]
rs11197084	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197087	0.83[EUR][1000 genomes]
rs11197091	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11197094	0.85[EUR][1000 genomes]
rs11197107	0.87[ASN][1000 genomes]
rs11197126	0.81[ASN][1000 genomes]
rs12218477	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12355617	0.89[EUR][1000 genomes]
rs12360503	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264756	0.83[ASN][1000 genomes]
rs1264765	0.81[AMR][1000 genomes]
rs1264768	0.87[ASN][1000 genomes]
rs1264782	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264783	0.91[ASN][1000 genomes]
rs1264794	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1264795	0.82[AMR][1000 genomes]
rs1264796	0.82[AMR][1000 genomes]
rs1264799	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264802	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1268460	0.87[ASN][1000 genomes]
rs1269602	0.82[EUR][1000 genomes]
rs1270654	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1537685	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1663157	0.91[ASN][1000 genomes]
rs17722681	0.84[ASN][1000 genomes]
rs1899718	0.86[EUR][1000 genomes]
rs1899721	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2152148	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2256046	0.84[ASN][1000 genomes]
rs2265930	0.84[ASN][1000 genomes]
rs35120367	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35728982	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4752724	0.83[ASN][1000 genomes]
rs7474585	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10885657	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116893200-116896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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