Variant report

Variant	rs10885658
Chromosome Location	chr10:116895201-116895202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1010610	0.82[EUR][1000 genomes]
rs10787554	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10787555	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885649	0.85[EUR][1000 genomes]
rs10885651	0.93[EUR][1000 genomes]
rs10885655	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885657	0.85[EUR][1000 genomes]
rs10885659	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885660	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885662	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10885664	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10885669	0.89[EUR][1000 genomes]
rs10885671	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885672	0.88[EUR][1000 genomes]
rs10885673	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885675	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10885676	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10885677	0.85[EUR][1000 genomes]
rs10885680	0.81[EUR][1000 genomes]
rs10885681	0.82[EUR][1000 genomes]
rs10885683	0.81[EUR][1000 genomes]
rs11197066	0.89[EUR][1000 genomes]
rs11197071	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11197081	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11197087	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197091	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11197093	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197094	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197103	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11197107	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11197110	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11197122	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11197126	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11197127	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197139	0.88[EUR][1000 genomes]
rs11197159	0.81[EUR][1000 genomes]
rs11525277	0.82[EUR][1000 genomes]
rs12218100	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12218477	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12355617	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12358411	0.87[EUR][1000 genomes]
rs12360503	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12573443	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1264748	0.90[ASN][1000 genomes]
rs1264756	0.82[EUR][1000 genomes]
rs1264763	0.82[EUR][1000 genomes]
rs1264765	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264782	0.82[EUR][1000 genomes]
rs1264794	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264795	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264796	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264799	0.82[EUR][1000 genomes]
rs1264802	0.92[EUR][1000 genomes]
rs1268459	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1268916	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1269602	0.92[EUR][1000 genomes]
rs1270442	0.84[ASN][1000 genomes]
rs1270654	0.82[EUR][1000 genomes]
rs1537685	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17092908	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17722681	0.86[EUR][1000 genomes]
rs1899718	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1899721	0.91[EUR][1000 genomes]
rs2152148	0.93[EUR][1000 genomes]
rs2172669	0.81[EUR][1000 genomes]
rs2256046	0.86[EUR][1000 genomes]
rs2420075	0.85[EUR][1000 genomes]
rs2440313	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35120367	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35728982	0.93[EUR][1000 genomes]
rs4752724	0.89[EUR][1000 genomes]
rs61880825	0.82[EUR][1000 genomes]
rs7474585	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10885658	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116893200-116896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:116893800-116899400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:116894200-116896000	Weak transcription	Fetal Kidney	kidney

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