Variant report

Variant	rs10886069
Chromosome Location	chr10:119165399-119165400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119165364..119168104-chr10:119178844..119180841,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10082463	0.84[GIH][hapmap];0.86[MEX][hapmap];0.80[EUR][1000 genomes]
rs10082507	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes]
rs10787768	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10787769	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10787772	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10886062	0.80[GIH][hapmap]
rs11197945	0.86[EUR][1000 genomes]
rs11197957	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197961	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197983	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197985	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12221325	0.86[EUR][1000 genomes]
rs12243925	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12244411	1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap]
rs12249877	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12250377	0.86[EUR][1000 genomes]
rs12260782	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12572369	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12573252	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2153714	0.80[GIH][hapmap]
rs2283142	0.86[EUR][1000 genomes]
rs363262	0.84[EUR][1000 genomes]
rs363279	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs363296	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs4751621	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4751622	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4752051	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4752052	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4752055	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4752056	0.80[GIH][hapmap]
rs7090219	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72825561	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119160000-119172400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:119162200-119166200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:119163000-119165800	Enhancers	Liver	Liver
4	chr10:119164400-119170200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:119164600-119170200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:119164800-119166200	Weak transcription	K562	blood
7	chr10:119164800-119167800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:119164800-119173400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:119165000-119166600	Enhancers	HepG2	liver
10	chr10:119165000-119167600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:119165200-119167600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:119165200-119170400	Weak transcription	Duodenum Mucosa	Duodenum

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