Variant report

Variant	rs10889206
Chromosome Location	chr1:61559333-61559334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61514738..61525752-chr1:61554119..61562013,14	K562	blood:
2	chr1:61558889..61561862-chr1:61574499..61577159,2	K562	blood:
3	chr1:61517870..61519563-chr1:61557073..61560001,2	K562	blood:
4	chr1:61558428..61559949-chr1:61569438..61571785,2	K562	blood:
5	chr1:61514738..61517434-chr1:61556907..61559504,2	K562	blood:
6	chr1:61558952..61561705-chr1:61569096..61571977,3	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10493302	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12082005	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133298	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1391432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909118	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2050544	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2807990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs334708	0.89[YRI][hapmap]
rs334735	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs334736	0.89[EUR][1000 genomes]
rs334738	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs384893	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4430360	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4620575	0.82[JPT][hapmap]
rs6670604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9436630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs964091	0.82[JPT][hapmap]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61549800-61559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:61550200-61559400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:61550400-61560000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:61550600-61561000	Weak transcription	Colonic Mucosa	Colon
5	chr1:61550800-61559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:61554400-61559400	Weak transcription	Osteobl	bone
7	chr1:61554600-61559400	Weak transcription	Left Ventricle	heart
8	chr1:61554600-61559400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:61554600-61559400	Weak transcription	HMEC	breast
10	chr1:61554600-61560200	Weak transcription	Ovary	ovary
11	chr1:61554600-61561800	Weak transcription	Pancreas	Pancrea
12	chr1:61554600-61563000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:61554600-61565800	Weak transcription	Gastric	stomach
14	chr1:61554600-61567000	Weak transcription	NHLF	lung
15	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
16	chr1:61554800-61561200	Active TSS	Fetal Brain Female	brain
17	chr1:61554800-61563200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:61555000-61563000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:61555400-61565800	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:61555800-61560200	Enhancers	Liver	Liver
21	chr1:61555800-61563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:61556200-61561400	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:61556400-61559600	Weak transcription	HUVEC	blood vessel
25	chr1:61556400-61560800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:61556400-61560800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:61556600-61559600	Weak transcription	Fetal Stomach	stomach
28	chr1:61556600-61563000	Weak transcription	HSMM	muscle
29	chr1:61556600-61567000	Weak transcription	HSMMtube	muscle
30	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr1:61556800-61561200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr1:61556800-61561600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr1:61557200-61561400	Enhancers	Brain Anterior Caudate	brain
34	chr1:61557400-61559600	Genic enhancers	K562	blood
35	chr1:61557800-61564200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:61558000-61561400	Enhancers	Fetal Lung	lung
37	chr1:61558600-61559400	Weak transcription	Aorta	Aorta
38	chr1:61558600-61559400	Enhancers	Brain Hippocampus Middle	brain
39	chr1:61558600-61559400	Enhancers	Fetal Brain Male	brain
40	chr1:61558600-61559400	Weak transcription	Psoas Muscle	Psoas
41	chr1:61558600-61559400	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr1:61558600-61559600	Weak transcription	Brain Angular Gyrus	brain
43	chr1:61558600-61559600	Weak transcription	Stomach Mucosa	stomach
44	chr1:61558600-61559800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:61558600-61560600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr1:61558600-61561000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr1:61558600-61561400	Weak transcription	Spleen	Spleen
48	chr1:61558600-61562800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:61558600-61563000	Weak transcription	Right Ventricle	heart
50	chr1:61558600-61563400	Weak transcription	Brain Inferior Temporal Lobe	brain

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