Variant report

Variant	rs10889892
Chromosome Location	chr1:71279709-71279710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71273558..71276293-chr1:71278434..71280516,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10889891	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11209705	0.93[ASN][1000 genomes]
rs11803673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11810467	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12026099	0.81[ASN][1000 genomes]
rs12026456	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12034333	0.82[ASN][1000 genomes]
rs12040186	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12049445	0.93[ASN][1000 genomes]
rs12049500	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1335002	0.82[ASN][1000 genomes]
rs1591386	0.84[ASN][1000 genomes]
rs17131473	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17131485	0.83[ASN][1000 genomes]
rs1889598	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1932050	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2068652	0.83[ASN][1000 genomes]
rs2152121	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2152122	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2782768	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2782769	0.83[ASN][1000 genomes]
rs2782770	0.84[ASN][1000 genomes]
rs2820540	0.83[EUR][1000 genomes]
rs2820541	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2820542	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34087524	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34745168	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35615554	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36021131	0.83[ASN][1000 genomes]
rs55884889	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6661453	0.81[ASN][1000 genomes]
rs74086786	0.94[ASN][1000 genomes]
rs74086973	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74086974	0.82[ASN][1000 genomes]
rs74086976	0.82[ASN][1000 genomes]
rs74086980	0.82[ASN][1000 genomes]
rs915220	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71278800-71283600	Weak transcription	NHDF-Ad	bronchial
2	chr1:71279000-71283600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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