Variant report

Variant	rs10891550
Chromosome Location	chr11:113328682-113328683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10789943	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789944	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10789945	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10891551	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10891552	0.90[ASN][1000 genomes]
rs10891556	0.83[AMR][1000 genomes]
rs10891565	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11214611	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11214618	0.83[AMR][1000 genomes]
rs11214632	0.81[ASN][1000 genomes]
rs11214633	0.83[ASN][1000 genomes]
rs11214635	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12421616	0.90[ASN][1000 genomes]
rs2002228	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2002229	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4245149	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4350392	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4447205	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4548655	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4648317	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4938019	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4938026	0.83[ASN][1000 genomes]
rs55887984	0.90[ASN][1000 genomes]
rs7117915	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7122454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7479729	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898394	chr11:113298339-113341391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv1821565	chr11:113306765-113331532	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113327600-113329400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:113327600-113329400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:113327800-113328800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:113327800-113328800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:113327800-113328800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:113327800-113328800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:113327800-113329200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:113327800-113329400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:113328200-113329400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:113328400-113328800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:113328400-113328800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr11:113328400-113328800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:113328400-113328800	Enhancers	Fetal Intestine Large	intestine
14	chr11:113328400-113329000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:113328400-113329200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:113328400-113329400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:113328600-113329200	Enhancers	Stomach Mucosa	stomach
18	chr11:113328600-113329400	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links