Variant report

Variant	rs10896159
Chromosome Location	chr11:56038956-56038957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr11:56038560-56038962	H1-hESC	embryonic stem cell:	n/a	chr11:56038777-56038786 chr11:56038779-56038788 chr11:56038770-56038788
2	SIX5	chr11:56038534-56039004	H1-hESC	embryonic stem cell:	n/a	chr11:56038779-56038788 chr11:56038776-56038790 chr11:56038777-56038786

Variant related genes	Relation type
OR5T1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1002773	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895996	0.93[YRI][hapmap]
rs10896271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10896272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10896333	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11227719	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11228071	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11228165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228166	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1156808	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11600863	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1351534	0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1573511	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17150286	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17150411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1842674	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1894026	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1945232	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4939044	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57377676	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7126993	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7481663	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs998544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
6	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	esv3379598	chr11:56020228-56043618	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links