Variant report

Variant	rs10896227
Chromosome Location	chr11:56099991-56099992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56099968-56100018	HMEC	breast:	n/a
2	chr11:56099968-56100018	HPAEpiC	pulmonary alveolar:	n/a
3	chr11:56099968-56100018	PANC-1	pancreas:	n/a
4	chr11:56099968-56100018	HCPEpiC	choroid plexus:	n/a
5	chr11:56099968-56100018	AG09319	gingival:	n/a
6	chr11:56099968-56100018	AoSMC	blood vessel:	n/a
7	chr11:56099968-56100018	MCF-7	breast:	n/a
8	chr11:56099968-56100018	IMR90	lung:	fetal
9	chr11:56099968-56100018	Caco-2	colon:	n/a
10	chr11:56099968-56100018	HNPCEpiC	eye:	n/a
11	chr11:56099968-56100018	HCM	heart:	n/a
12	chr11:56099968-56100018	ovcar-3	ovarian:	n/a
13	chr11:56099968-56100018	A549	lung:	n/a
14	chr11:56099968-56100018	ProgFib	skin:	n/a
15	chr11:56099968-56100018	HRCEpiC	kidney:	n/a
16	chr11:56099968-56100018	HL-60	blood:	n/a
17	chr11:56099968-56100018	MCF10A-Er-Src	breast:	n/a
18	chr11:56099968-56100018	NB4	blood:	n/a
19	chr11:56099968-56100018	K562	blood:	n/a
20	chr11:56099968-56100018	AG04450	lung:	fetal
21	chr11:56099968-56100018	SKMC	muscle:	n/a
22	chr11:56099968-56100018	SAEC	small airway:	n/a
23	chr11:56099968-56100018	GM12891	blood:	n/a
24	chr11:56099968-56100018	GM19239	blood:	n/a
25	chr11:56099968-56100018	AG04449	skin:	fetal
26	chr11:56099968-56100018	SK-N-SH_RA	brain:	n/a
27	chr11:56099968-56100018	SK-N-SH	brain:	n/a
28	chr11:56099968-56100018	HEEpiC	esophagus:	n/a
29	chr11:56099968-56100018	HRE	kidney:	n/a
30	chr11:56099968-56100018	RPTEC	kidney:	n/a
31	chr11:56099968-56100018	HUVEC	blood vessel:	n/a
32	chr11:56099968-56100018	GM06990	blood:	n/a
33	chr11:56099968-56100018	GM12878	blood:	n/a
34	chr11:56099968-56100018	Jurkat	blood:	n/a
35	chr11:56099968-56100018	PrEC	prostate:	n/a
36	chr11:56099968-56100018	BJ	skin:	n/a
37	chr11:56099968-56100018	AG10803	skin:	n/a
38	chr11:56099968-56100018	BE2_C	brain:	n/a
39	chr11:56099968-56100018	AG09309	skin:	n/a
40	chr11:56099968-56100018	CMK	blood:	n/a
41	chr11:56099968-56100018	ECC-1	luminal epithelium:	n/a
42	chr11:56099968-56100018	GM12892	blood:	n/a
43	chr11:56099968-56100018	Hepatocyte	liver:	n/a
44	chr11:56099968-56100018	SK-N-MC	brain:	n/a
45	chr11:56099968-56100018	HAEpiC	amniotic membrane:	n/a
46	chr11:56099968-56100018	HEK293	kidney:	embryo
47	chr11:56099968-56100018	PFSK-1	brain:	n/a
48	chr11:56099968-56100018	NT2-D1	testis:	n/a
49	chr11:56099968-56100018	HCF	heart:	n/a
50	chr11:56099968-56100018	T-47D	breast:	n/a

No data

Variant related genes	Relation type
FAM8A2P	CpG island
OR8K2P	CpG island

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10896163	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10896325	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10896345	0.92[ASN][1000 genomes]
rs11227964	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12277883	0.92[ASN][1000 genomes]
rs12285921	0.90[ASN][1000 genomes]
rs12786642	0.87[ASN][1000 genomes]
rs1573512	0.92[ASN][1000 genomes]
rs1945228	0.92[ASN][1000 genomes]
rs2128132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2128139	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2128140	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2170442	0.92[EUR][1000 genomes]
rs2220001	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34434887	0.92[ASN][1000 genomes]
rs4420287	0.92[ASN][1000 genomes]
rs4938829	0.87[ASN][1000 genomes]
rs4939033	0.88[ASN][1000 genomes]
rs4939037	0.92[ASN][1000 genomes]
rs4939054	0.87[ASN][1000 genomes]
rs594113	0.91[ASN][1000 genomes]
rs594568	0.88[ASN][1000 genomes]
rs597016	0.83[ASN][1000 genomes]
rs597031	0.81[ASN][1000 genomes]
rs597045	0.83[ASN][1000 genomes]
rs597102	0.91[ASN][1000 genomes]
rs610822	0.91[ASN][1000 genomes]
rs612885	0.91[ASN][1000 genomes]
rs615231	0.91[ASN][1000 genomes]
rs621826	0.91[ASN][1000 genomes]
rs624412	0.91[ASN][1000 genomes]
rs634955	0.88[ASN][1000 genomes]
rs637202	0.91[ASN][1000 genomes]
rs639419	0.83[ASN][1000 genomes]
rs647027	0.91[ASN][1000 genomes]
rs647058	0.91[ASN][1000 genomes]
rs647402	0.88[ASN][1000 genomes]
rs652537	0.88[ASN][1000 genomes]
rs6591233	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591310	0.92[ASN][1000 genomes]
rs660788	0.91[ASN][1000 genomes]
rs663964	0.88[ASN][1000 genomes]
rs669453	0.90[ASN][1000 genomes]
rs672711	0.91[ASN][1000 genomes]
rs675120	0.91[ASN][1000 genomes]
rs675991	0.91[ASN][1000 genomes]
rs680490	0.88[ASN][1000 genomes]
rs683539	0.91[ASN][1000 genomes]
rs7105808	0.92[ASN][1000 genomes]
rs7116573	0.92[ASN][1000 genomes]
rs7126732	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7131637	0.91[ASN][1000 genomes]
rs7940239	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871301	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56097200-56104800	Weak transcription	H1 Cell Line	embryonic stem cell

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