Variant report

Variant	rs10896524
Chromosome Location	chr11:56488931-56488932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10501354	0.91[JPT][hapmap]
rs10736676	0.91[JPT][hapmap]
rs10736677	0.91[JPT][hapmap]
rs10736678	0.90[JPT][hapmap]
rs10792038	0.91[JPT][hapmap]
rs10792039	0.91[JPT][hapmap]
rs10792040	0.91[JPT][hapmap]
rs10792043	0.91[JPT][hapmap]
rs11228641	0.91[JPT][hapmap]
rs11228673	0.81[JPT][hapmap]
rs11228676	0.91[JPT][hapmap]
rs11228687	0.91[JPT][hapmap]
rs11228693	0.91[JPT][hapmap]
rs11228706	0.91[JPT][hapmap]
rs11228708	0.90[JPT][hapmap]
rs11228759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228768	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11228769	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11228775	0.83[EUR][1000 genomes]
rs11228776	0.84[EUR][1000 genomes]
rs12223492	0.91[JPT][hapmap]
rs12418150	0.91[JPT][hapmap]
rs12419545	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420430	0.91[AFR][1000 genomes]
rs12420689	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1473592	0.91[JPT][hapmap]
rs17151273	0.82[AFR][1000 genomes]
rs1945261	0.91[JPT][hapmap]
rs1945263	0.91[JPT][hapmap]
rs1945282	0.91[JPT][hapmap]
rs2865516	0.91[JPT][hapmap]
rs33995115	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs3914086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3942708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939061	0.91[JPT][hapmap]
rs4939065	0.91[JPT][hapmap]
rs4939066	0.91[JPT][hapmap]
rs57838808	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs583216	0.91[JPT][hapmap]
rs584608	0.91[JPT][hapmap]
rs597680	0.91[JPT][hapmap]
rs600187	0.91[JPT][hapmap]
rs60681477	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs611397	0.91[JPT][hapmap]
rs614942	0.91[JPT][hapmap]
rs628524	0.91[JPT][hapmap]
rs645351	0.91[JPT][hapmap]
rs646286	0.90[JPT][hapmap]
rs6591381	0.91[JPT][hapmap]
rs674431	0.91[JPT][hapmap]
rs688832	0.91[JPT][hapmap]
rs7113096	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7113508	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73478456	0.83[EUR][1000 genomes]
rs7924528	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	esv7703	chr11:56467760-56508007	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3431554	chr11:56467767-56507904	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3422861	chr11:56467922-56507848	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3512486	chr11:56467938-56507830	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3512487	chr11:56467938-56507830	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3413940	chr11:56467952-56507880	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
12	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
13	nsv983168	chr11:56482140-56491125	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56487200-56491800	Enhancers	Dnd41	blood

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