Variant report

Variant	rs10896582
Chromosome Location	chr11:56964398-56964399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10501363	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10896574	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10896575	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10896577	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896587	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896588	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11228936	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11228937	0.96[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11228941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228944	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228955	0.83[ASN][1000 genomes]
rs1124847	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs12225155	0.86[ASN][1000 genomes]
rs1943479	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1943486	0.94[ASN][1000 genomes]
rs1943489	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs2077189	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs2903267	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs3017575	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs3758922	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4939111	0.81[EUR][1000 genomes]
rs716745	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721608	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72918002	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs948849	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:56952600-56967000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:56959800-56968200	Weak transcription	Right Atrium	heart
4	chr11:56960000-56965400	Weak transcription	Fetal Brain Female	brain
5	chr11:56960000-56969600	Weak transcription	Psoas Muscle	Psoas
6	chr11:56962000-56965000	Enhancers	Adipose Nuclei	Adipose
7	chr11:56962600-56965800	Enhancers	Fetal Muscle Leg	muscle
8	chr11:56962800-56965400	Weak transcription	Right Ventricle	heart
9	chr11:56963400-56965000	Enhancers	HUVEC	blood vessel
10	chr11:56963400-56965400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:56963400-56970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:56964000-56965200	Weak transcription	Left Ventricle	heart
13	chr11:56964000-56965400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:56964000-56967400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:56964200-56968400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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