Variant report

Variant	rs10896588
Chromosome Location	chr11:56986484-56986485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501363	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10896574	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10896575	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10896577	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896582	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896593	0.88[ASN][1000 genomes]
rs11228936	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11228937	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11228941	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11228944	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11228955	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12225155	0.92[ASN][1000 genomes]
rs1943479	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1943486	0.84[ASN][1000 genomes]
rs3758922	0.84[ASN][1000 genomes]
rs716745	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs721608	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72918002	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs948849	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56982000-56986600	Weak transcription	Fetal Heart	heart
2	chr11:56982000-56989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:56982200-56986800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:56982400-56987000	Weak transcription	Placenta	Placenta
5	chr11:56982400-56988800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:56982600-56986600	Weak transcription	Fetal Stomach	stomach
7	chr11:56982600-56986800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:56982600-56986800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:56982600-56989600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:56982600-56991000	Weak transcription	Osteobl	bone
11	chr11:56982600-56991800	Weak transcription	NHDF-Ad	bronchial
12	chr11:56983000-56989600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:56983800-56987200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:56984800-56988600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:56984800-56991000	Weak transcription	HSMMtube	muscle
16	chr11:56984800-56991200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:56985000-56986800	Weak transcription	Left Ventricle	heart
18	chr11:56985000-56987000	Weak transcription	Lung	lung
19	chr11:56985000-56987000	Weak transcription	Right Ventricle	heart
20	chr11:56985000-56989400	Weak transcription	HUVEC	blood vessel
21	chr11:56986000-56987400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:56986000-56988600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:56986200-56987000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:56986200-56987200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:56986200-56987600	Enhancers	Spleen	Spleen
26	chr11:56986200-56987800	Enhancers	Right Atrium	heart
27	chr11:56986400-56986600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr11:56986400-56986800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:56986400-56987000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:56986400-56987000	Enhancers	Brain Anterior Caudate	brain
31	chr11:56986400-56987000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:56986400-56987200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:56986400-56987200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:56986400-56987200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:56986400-56987200	Enhancers	K562	blood
36	chr11:56986400-56987600	Enhancers	Adipose Nuclei	Adipose
37	chr11:56986400-56987600	Enhancers	Fetal Muscle Leg	muscle

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