Variant report

Variant	rs10896593
Chromosome Location	chr11:56991192-56991193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56989037..56991877-chr11:56993430..56996007,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10896573	0.82[EUR][1000 genomes]
rs10896587	0.88[ASN][1000 genomes]
rs10896588	0.88[ASN][1000 genomes]
rs11228955	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1124847	0.84[EUR][1000 genomes]
rs12225155	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1941035	0.82[EUR][1000 genomes]
rs1943479	0.81[ASN][1000 genomes]
rs1943486	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1943489	0.84[EUR][1000 genomes]
rs1943491	0.82[EUR][1000 genomes]
rs2077189	0.84[EUR][1000 genomes]
rs2903267	0.84[EUR][1000 genomes]
rs3017571	0.83[EUR][1000 genomes]
rs3017574	0.84[EUR][1000 genomes]
rs3017575	0.84[EUR][1000 genomes]
rs3758922	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4939111	0.88[EUR][1000 genomes]
rs721608	0.93[ASN][1000 genomes]
rs948850	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56982600-56991800	Weak transcription	NHDF-Ad	bronchial
2	chr11:56984800-56991200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:56987000-56991400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:56987200-56991200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:56987200-56991400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:56987200-56995200	Weak transcription	Left Ventricle	heart
7	chr11:56987600-57000800	Weak transcription	Spleen	Spleen
8	chr11:56988600-56992400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:56988600-56992400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:56988600-56992800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:56989000-56991600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:56989600-56992800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:56989600-56997800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:56990000-56991400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:56990000-56991600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:56990000-56991600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:56990000-56991600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:56990400-56991400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:56990400-56992200	Weak transcription	HUVEC	blood vessel
20	chr11:56990600-56991600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:56991000-56991200	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:56991000-56992000	Enhancers	NH-A	brain
23	chr11:56991000-56992400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:56991000-56992400	Enhancers	Osteobl	bone
25	chr11:56991000-56992600	Enhancers	HSMMtube	muscle
26	chr11:56991000-56992800	Enhancers	HSMM	muscle

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