Variant report

Variant	rs10899162
Chromosome Location	chr11:75868099-75868100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75865596..75868388-chr11:75876534..75879243,2	K562	blood:
2	chr11:75867883..75870652-chr11:75871506..75874252,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10899161	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899164	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10899165	0.91[ASN][1000 genomes]
rs10899166	0.91[ASN][1000 genomes]
rs11236630	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11236631	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11236633	0.91[ASN][1000 genomes]
rs11236634	0.91[ASN][1000 genomes]
rs11605944	0.85[EUR][1000 genomes]
rs12294072	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944089	0.91[ASN][1000 genomes]
rs4944090	0.82[ASN][1000 genomes]
rs4945033	0.91[ASN][1000 genomes]
rs4945034	0.91[ASN][1000 genomes]
rs4945038	0.91[ASN][1000 genomes]
rs57946456	0.82[ASN][1000 genomes]
rs61894401	0.82[ASN][1000 genomes]
rs61894402	0.82[ASN][1000 genomes]
rs68167014	0.82[ASN][1000 genomes]
rs7934250	0.91[ASN][1000 genomes]
rs7945655	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1051472	chr11:75851880-75922608	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1037940	chr11:75855316-75909619	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897927	chr11:75866999-75908083	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:75862800-75869200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:75864400-75871800	Weak transcription	Right Atrium	heart
4	chr11:75864600-75872600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:75865000-75868200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:75865000-75868800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:75865000-75869000	Weak transcription	Pancreas	Pancrea
8	chr11:75865000-75869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:75865000-75876000	Weak transcription	Spleen	Spleen
10	chr11:75865800-75870400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:75867200-75868200	Weak transcription	Fetal Lung	lung
12	chr11:75867200-75868200	Enhancers	Fetal Muscle Leg	muscle
13	chr11:75867400-75869000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:75867800-75875200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr11:75868000-75868200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:75868000-75868200	Enhancers	Fetal Thymus	thymus
17	chr11:75868000-75868200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr11:75868000-75868200	Flanking Active TSS	HepG2	liver
19	chr11:75868000-75868400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr11:75868000-75868800	Enhancers	Fetal Heart	heart
21	chr11:75868000-75869200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:75868000-75869800	Bivalent Enhancer	Fetal Stomach	stomach

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