Variant report

Variant	rs10899186
Chromosome Location	chr11:75962755-75962756
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10793144	0.88[ASN][1000 genomes]
rs10793145	0.88[ASN][1000 genomes]
rs10793146	0.89[ASN][1000 genomes]
rs10793147	0.82[EUR][1000 genomes]
rs10899185	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10899187	0.89[ASN][1000 genomes]
rs4944097	0.90[ASN][1000 genomes]
rs4944098	0.87[ASN][1000 genomes]
rs4944099	0.90[ASN][1000 genomes]
rs4944100	0.90[ASN][1000 genomes]
rs4945053	0.83[AFR][1000 genomes]
rs4945055	0.89[ASN][1000 genomes]
rs9919575	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9919601	0.89[ASN][1000 genomes]
rs9988819	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9988835	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9988854	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9988910	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9988918	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1035371	chr11:75869435-75964374	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1046769	chr11:75869737-75964374	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1040118	chr11:75870189-75995089	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1044894	chr11:75871240-75964374	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1053129	chr11:75871240-75997663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75955000-75967800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:75955600-75967800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:75960200-75964200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:75960800-75962800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:75961000-75963600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:75961000-75965200	Weak transcription	Pancreas	Pancrea
7	chr11:75961200-75963200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:75961800-75963200	Enhancers	Adipose Nuclei	Adipose
9	chr11:75961800-75963200	Enhancers	Right Atrium	heart
10	chr11:75962000-75963200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:75962000-75963400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:75962000-75963600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:75962200-75963000	Enhancers	Hela-S3	cervix
14	chr11:75962400-75963200	Bivalent Enhancer	Osteobl	bone
15	chr11:75962600-75962800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:75962600-75963200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr11:75962600-75963600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:75962600-75983600	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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