Variant report

Variant	rs10899221
Chromosome Location	chr11:76181631-76181632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76157016..76158570-chr11:76180919..76182770,2	K562	blood:
2	chr11:76178745..76180889-chr11:76180922..76183428,2	K562	blood:
3	chr11:76181244..76183930-chr11:76199565..76201178,2	K562	blood:
4	chr11:76155355..76156917-chr11:76181078..76182842,2	K562	blood:
5	chr11:76178422..76180245-chr11:76180873..76183428,2	K562	blood:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11236723	1.00[ASW][hapmap]
rs11236746	1.00[ASW][hapmap]
rs72934340	1.00[AFR][1000 genomes]
rs72944758	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157200-76183400	Weak transcription	Gastric	stomach
2	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
4	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
7	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
8	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
10	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
11	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:76159800-76190400	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:76162200-76183600	Weak transcription	Lung	lung
14	chr11:76164400-76182400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:76164400-76183600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:76164600-76182800	Weak transcription	Fetal Brain Male	brain
17	chr11:76164800-76188600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:76165600-76183400	Weak transcription	Aorta	Aorta
19	chr11:76165600-76183400	Weak transcription	Pancreas	Pancrea
20	chr11:76166800-76183600	Weak transcription	Osteobl	bone
21	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
22	chr11:76167000-76183800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:76167200-76190200	Weak transcription	NHLF	lung
24	chr11:76167800-76192000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:76168600-76187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
27	chr11:76169800-76182800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:76170400-76182600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:76170600-76182200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr11:76170600-76183600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:76171400-76183400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:76171400-76183600	Weak transcription	Brain Angular Gyrus	brain
34	chr11:76171400-76183600	Weak transcription	NHEK	skin
35	chr11:76171400-76190200	Weak transcription	Fetal Heart	heart
36	chr11:76172000-76183600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:76172400-76187800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr11:76172800-76183600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:76173200-76187000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:76173400-76187200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:76173400-76188000	Strong transcription	Primary B cells from cord blood	blood
42	chr11:76173400-76191400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:76173400-76191600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:76173600-76191600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:76173800-76190000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:76174800-76187000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:76174800-76188000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:76174800-76191400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:76175000-76181800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:76175200-76182600	Weak transcription	Brain Anterior Caudate	brain

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