Variant report

Variant	rs10899278
Chromosome Location	chr11:76465929-76465930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76460876..76462909-chr11:76463917..76467153,3	MCF-7	breast:
2	chr11:76464979..76468586-chr11:76498537..76501368,3	MCF-7	breast:
3	chr11:76465635..76468118-chr11:76468545..76471163,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160660	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10160769	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10437754	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793194	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793195	0.97[EUR][1000 genomes]
rs10899279	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899280	0.98[EUR][1000 genomes]
rs10899281	0.97[EUR][1000 genomes]
rs10899282	0.97[EUR][1000 genomes]
rs10899283	0.97[EUR][1000 genomes]
rs11236923	0.91[ASN][1000 genomes]
rs11236924	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236936	0.97[EUR][1000 genomes]
rs12273016	0.85[EUR][1000 genomes]
rs12282785	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12290350	0.93[EUR][1000 genomes]
rs12788118	0.86[EUR][1000 genomes]
rs1440977	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440978	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440979	0.98[EUR][1000 genomes]
rs1440980	0.92[EUR][1000 genomes]
rs1465900	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837679	0.92[EUR][1000 genomes]
rs1837680	0.97[EUR][1000 genomes]
rs1866843	0.96[EUR][1000 genomes]
rs3758711	0.97[EUR][1000 genomes]
rs4309181	0.97[EUR][1000 genomes]
rs56228827	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107409	0.97[EUR][1000 genomes]
rs737185	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933092	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942337	1.00[EUR][1000 genomes]
rs7942368	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3402733	chr11:76465821-76466325	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76457000-76474600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76459000-76469600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76461000-76473800	Weak transcription	Small Intestine	intestine
4	chr11:76461600-76468000	Weak transcription	HSMMtube	muscle
5	chr11:76462600-76468400	Weak transcription	Fetal Brain Female	brain
6	chr11:76463800-76469200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:76464000-76467200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:76464000-76469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:76464200-76467200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:76464200-76467400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:76464200-76469600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:76464200-76469800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:76464200-76470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:76464200-76473600	Weak transcription	Right Ventricle	heart
15	chr11:76464400-76467200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:76464400-76467400	Weak transcription	Fetal Brain Male	brain
17	chr11:76464600-76467000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:76464600-76467200	Weak transcription	Brain Germinal Matrix	brain
19	chr11:76464600-76467400	Weak transcription	Fetal Intestine Small	intestine
20	chr11:76464600-76469800	Weak transcription	K562	blood
21	chr11:76464800-76467000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:76464800-76467200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:76464800-76467200	Weak transcription	Esophagus	oesophagus
24	chr11:76464800-76467400	Weak transcription	Colonic Mucosa	Colon
25	chr11:76464800-76467400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:76464800-76470400	Weak transcription	A549	lung
27	chr11:76464800-76474000	Weak transcription	Left Ventricle	heart
28	chr11:76464800-76474000	Weak transcription	Spleen	Spleen
29	chr11:76464800-76474200	Weak transcription	Fetal Lung	lung
30	chr11:76465000-76467400	Weak transcription	Stomach Mucosa	stomach
31	chr11:76465000-76468600	Weak transcription	Fetal Heart	heart
32	chr11:76465200-76467000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:76465200-76467000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:76465200-76467400	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:76465200-76469600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:76465200-76473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:76465400-76470200	Weak transcription	Placenta	Placenta
38	chr11:76465400-76474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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