Variant report

Variant	rs10899279
Chromosome Location	chr11:76477244-76477245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76155468..76156969-chr11:76476055..76478138,2	MCF-7	breast:
2	chr11:76475812..76477877-chr11:76571809..76573437,2	MCF-7	breast:
3	chr11:76448672..76451202-chr11:76476087..76478426,2	MCF-7	breast:
4	chr11:76475834..76477640-chr11:76498585..76500944,2	K562	blood:
5	chr11:76457361..76460008-chr11:76475009..76477808,2	MCF-7	breast:
6	chr11:76476664..76478298-chr11:76488462..76489979,2	K562	blood:
7	chr11:76475599..76479568-chr11:76492254..76495485,3	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160660	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160769	1.00[EUR][1000 genomes]
rs10437754	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793194	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793195	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899278	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899280	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10899281	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899282	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899283	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11236923	0.90[ASN][1000 genomes]
rs11236924	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236936	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12273016	0.86[EUR][1000 genomes]
rs12282785	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290350	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12788118	0.87[EUR][1000 genomes]
rs1440977	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440978	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440979	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1440980	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1465900	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837679	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1837680	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1866843	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3758711	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4309181	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56228827	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107409	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs737185	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7933092	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942337	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7942368	0.97[EUR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
4	chr11:76473000-76478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:76473600-76483200	Enhancers	Esophagus	oesophagus
6	chr11:76473800-76479200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:76474000-76478800	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:76474000-76481000	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:76474000-76481200	Enhancers	Spleen	Spleen
10	chr11:76474000-76485600	Enhancers	Left Ventricle	heart
11	chr11:76474200-76477400	Enhancers	Fetal Lung	lung
12	chr11:76474200-76478200	Enhancers	Right Ventricle	heart
13	chr11:76474400-76485400	Enhancers	Fetal Muscle Leg	muscle
14	chr11:76475000-76477400	Enhancers	Fetal Brain Female	brain
15	chr11:76475000-76478800	Enhancers	Fetal Heart	heart
16	chr11:76475000-76480800	Enhancers	Fetal Brain Male	brain
17	chr11:76475200-76478200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:76475200-76479000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:76475200-76479000	Weak transcription	K562	blood
20	chr11:76475400-76477400	Weak transcription	HSMMtube	muscle
21	chr11:76475400-76478200	Weak transcription	Small Intestine	intestine
22	chr11:76475400-76478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:76475400-76478600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:76475400-76478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:76475400-76478600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:76475400-76478800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:76475400-76478800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:76475400-76478800	Weak transcription	Brain Angular Gyrus	brain
29	chr11:76475400-76479000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:76475400-76479000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:76475400-76479200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:76475400-76479200	Weak transcription	NHDF-Ad	bronchial
33	chr11:76475400-76479400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:76475400-76481800	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:76475600-76477400	Weak transcription	Stomach Mucosa	stomach
36	chr11:76475600-76478800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:76475600-76479800	Weak transcription	Brain Anterior Caudate	brain
38	chr11:76475800-76478600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:76475800-76478800	Weak transcription	Brain Germinal Matrix	brain
40	chr11:76475800-76479000	Weak transcription	HSMM	muscle
41	chr11:76475800-76479000	Weak transcription	Osteobl	bone
42	chr11:76476000-76478000	Weak transcription	Hela-S3	cervix
43	chr11:76476000-76478400	Weak transcription	HMEC	breast
44	chr11:76476000-76479000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:76476000-76479000	Weak transcription	HUVEC	blood vessel
46	chr11:76476200-76477600	Enhancers	Pancreas	Pancrea
47	chr11:76476200-76478400	Weak transcription	NHEK	skin
48	chr11:76476200-76485600	Enhancers	Fetal Intestine Large	intestine
49	chr11:76476400-76478400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:76476400-76479000	Weak transcription	Gastric	stomach

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