Variant report

Variant	rs10899283
Chromosome Location	chr11:76505202-76505203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76504803..76506935-chr11:76570633..76574402,3	MCF-7	breast:
2	chr11:76504410..76507803-chr11:76511412..76514048,3	MCF-7	breast:
3	chr11:76499655..76502011-chr11:76503724..76505940,3	K562	blood:
4	chr11:76504952..76506827-chr11:76516420..76519216,2	MCF-7	breast:
5	chr11:76504723..76506635-chr11:76511764..76514522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10160660	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160769	0.98[EUR][1000 genomes]
rs10437754	0.98[EUR][1000 genomes]
rs10793194	0.84[CHD][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10793195	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899278	0.97[EUR][1000 genomes]
rs10899279	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899280	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899281	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236924	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11236936	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273016	0.87[ASW][hapmap];0.94[CHD][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12282785	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12290350	0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12788118	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1440977	0.98[EUR][1000 genomes]
rs1440978	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1440979	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1440980	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1465900	0.84[CHD][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1837679	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1837680	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866843	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3758711	0.89[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4309181	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228827	0.98[EUR][1000 genomes]
rs7107409	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs737185	0.98[EUR][1000 genomes]
rs7933092	0.96[EUR][1000 genomes]
rs7942337	0.97[EUR][1000 genomes]
rs7942368	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496000-76506800	Weak transcription	Aorta	Aorta
2	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
3	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:76496800-76507400	Enhancers	Stomach Mucosa	stomach
5	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:76498400-76505800	Enhancers	Placenta	Placenta
7	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
8	chr11:76500000-76506400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:76500400-76505600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
13	chr11:76502200-76505400	Genic enhancers	HMEC	breast
14	chr11:76502400-76505400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:76502600-76505400	Enhancers	Osteobl	bone
16	chr11:76503000-76506200	Enhancers	Fetal Intestine Large	intestine
17	chr11:76503200-76506600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:76503400-76509400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:76503400-76510000	Weak transcription	K562	blood
20	chr11:76503600-76505400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:76503600-76506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:76503800-76505400	Enhancers	Pancreas	Pancrea
23	chr11:76503800-76505800	Enhancers	Fetal Muscle Leg	muscle
24	chr11:76503800-76506000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:76503800-76506200	Transcr. at gene 5' and 3'	A549	lung
26	chr11:76504000-76505400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr11:76504000-76505400	Enhancers	Colonic Mucosa	Colon
28	chr11:76504000-76505400	Enhancers	Right Ventricle	heart
29	chr11:76504000-76505400	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:76504000-76505600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr11:76504000-76505600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:76504000-76505600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:76504000-76505600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:76504000-76505600	Genic enhancers	NHEK	skin
35	chr11:76504000-76505800	Enhancers	Fetal Brain Female	brain
36	chr11:76504000-76506000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:76504000-76506000	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:76504000-76506000	Enhancers	Lung	lung
39	chr11:76504000-76506800	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:76504000-76507400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:76504200-76505400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr11:76504200-76505400	Flanking Active TSS	HepG2	liver
43	chr11:76504200-76505600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:76504200-76505600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr11:76504200-76505600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:76504200-76505600	Enhancers	Fetal Lung	lung
47	chr11:76504200-76506200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:76504200-76506400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr11:76504200-76507600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:76504200-76510000	Genic enhancers	Esophagus	oesophagus

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