Variant report

Variant	rs10899292
Chromosome Location	chr11:76566347-76566348
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76558871..76560605-chr11:76564963..76566676,2	K562	blood:
2	chr11:76551001..76553533-chr11:76566118..76568951,2	K562	blood:
3	chr11:76566306..76569293-chr11:76569398..76571273,2	K562	blood:
4	chr11:76564296..76568094-chr11:76569761..76574800,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 174 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10082568	0.89[ASN][1000 genomes]
rs1025815	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10431154	0.90[ASN][1000 genomes]
rs10431181	0.90[ASN][1000 genomes]
rs10431182	0.90[ASN][1000 genomes]
rs10751262	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751263	0.81[AMR][1000 genomes]
rs10751264	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751267	0.90[ASN][1000 genomes]
rs10751268	0.90[ASN][1000 genomes]
rs10793201	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793204	0.84[ASN][1000 genomes]
rs10793205	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793206	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793207	0.84[ASN][1000 genomes]
rs10793209	0.83[ASN][1000 genomes]
rs10793211	0.89[ASN][1000 genomes]
rs10793212	0.90[ASN][1000 genomes]
rs10793213	0.90[ASN][1000 genomes]
rs10793214	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793215	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793216	0.85[ASN][1000 genomes]
rs10793217	0.90[ASN][1000 genomes]
rs10793218	0.89[ASN][1000 genomes]
rs10793219	0.89[ASN][1000 genomes]
rs10793220	0.89[ASN][1000 genomes]
rs10793221	0.89[ASN][1000 genomes]
rs10899294	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899295	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899297	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899298	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899301	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899302	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899303	0.81[AMR][1000 genomes]
rs10899305	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899307	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899308	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899310	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899311	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899312	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899313	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899315	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899316	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899320	0.82[ASN][1000 genomes]
rs10899321	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899325	0.89[ASN][1000 genomes]
rs10899327	0.90[ASN][1000 genomes]
rs10899328	0.90[ASN][1000 genomes]
rs10899329	0.90[ASN][1000 genomes]
rs10899330	0.90[ASN][1000 genomes]
rs10899332	0.90[ASN][1000 genomes]
rs11236977	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236999	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237023	0.85[ASN][1000 genomes]
rs11237025	0.90[ASN][1000 genomes]
rs11237027	0.90[ASN][1000 genomes]
rs11237029	0.82[ASN][1000 genomes]
rs11237031	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237035	0.90[ASN][1000 genomes]
rs11533271	0.83[ASN][1000 genomes]
rs11535857	0.91[ASN][1000 genomes]
rs11537264	0.89[ASN][1000 genomes]
rs12222825	0.90[ASN][1000 genomes]
rs12292156	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12718490	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12788158	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12794575	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796913	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12807735	0.89[ASN][1000 genomes]
rs1356455	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356456	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1372046	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474087	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517905	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517906	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1607285	0.90[ASN][1000 genomes]
rs1816748	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1907295	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914599	0.90[ASN][1000 genomes]
rs1914600	0.90[ASN][1000 genomes]
rs1965151	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980204	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1980205	0.84[ASN][1000 genomes]
rs1986000	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043986	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119456	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119457	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2165404	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2203755	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372386	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2372388	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4367972	0.82[ASN][1000 genomes]
rs4379869	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457775	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4471450	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4479014	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488228	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488229	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4556574	0.90[ASN][1000 genomes]
rs4586198	0.85[ASN][1000 genomes]
rs4604914	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944128	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944129	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945115	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945116	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945118	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945119	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945124	0.90[ASN][1000 genomes]
rs4945125	0.90[ASN][1000 genomes]
rs55956901	0.87[ASN][1000 genomes]
rs56955124	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592671	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592672	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592675	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592676	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592677	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592678	0.81[AMR][1000 genomes]
rs6592679	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6592680	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592682	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592684	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592685	0.84[ASN][1000 genomes]
rs6592687	0.90[ASN][1000 genomes]
rs7102485	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103308	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7105895	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106611	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106625	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110849	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7113282	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113290	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114827	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115092	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116513	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116800	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116872	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117545	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117682	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118762	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119361	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120215	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122736	0.89[ASN][1000 genomes]
rs7126666	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128770	0.89[ASN][1000 genomes]
rs7129147	0.89[ASN][1000 genomes]
rs7924605	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924613	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7924888	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925135	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7927658	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929837	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7930307	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7931561	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932288	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933248	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7933351	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937883	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942574	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7942646	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947809	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7949041	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7951501	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9326485	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs938809	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs938810	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963704	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs963705	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964521	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9666315	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9666322	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9795229	0.82[ASN][1000 genomes]
rs9795281	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9795388	0.83[ASN][1000 genomes]
rs9795398	0.84[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76550600-76566400	Weak transcription	Lung	lung
4	chr11:76562000-76567200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:76562200-76570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:76562400-76569800	Weak transcription	Placenta	Placenta
10	chr11:76562600-76567400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:76563200-76566400	Weak transcription	Thymus	Thymus
12	chr11:76563400-76566800	Weak transcription	GM12878-XiMat	blood
13	chr11:76564000-76567400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:76565200-76568200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:76565400-76566600	Enhancers	HMEC	breast
16	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:76565600-76566600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:76565600-76566800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr11:76566000-76567400	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:76566000-76568600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:76566000-76569000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:76566000-76571000	Weak transcription	K562	blood
23	chr11:76566000-76571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:76566200-76571000	Weak transcription	NHEK	skin

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