Variant report

Variant	rs10899340
Chromosome Location	chr11:76695389-76695390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76693879..76696563-chr11:76699673..76701721,2	MCF-7	breast:

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs10082568	0.83[EUR][1000 genomes]
rs10431154	0.83[EUR][1000 genomes]
rs10431181	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10431182	0.83[EUR][1000 genomes]
rs10736811	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751263	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751264	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10751267	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10751268	0.94[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10751270	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751271	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793211	0.83[EUR][1000 genomes]
rs10793212	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793213	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793214	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10793215	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10793216	0.82[EUR][1000 genomes]
rs10793217	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793219	0.82[EUR][1000 genomes]
rs10793220	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs10793221	0.84[EUR][1000 genomes]
rs10793223	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793224	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793225	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793226	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793228	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899298	0.82[AFR][1000 genomes]
rs10899303	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899307	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs10899310	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10899311	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10899312	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10899313	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899315	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899327	0.83[EUR][1000 genomes]
rs10899328	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs10899329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs10899330	0.83[EUR][1000 genomes]
rs10899332	0.83[EUR][1000 genomes]
rs10899333	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899343	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899344	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237025	0.82[EUR][1000 genomes]
rs11237027	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs11237029	0.80[EUR][1000 genomes]
rs11237031	0.83[EUR][1000 genomes]
rs11237035	0.83[EUR][1000 genomes]
rs11237036	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11237052	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222825	0.83[EUR][1000 genomes]
rs12223659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279946	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286501	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286600	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292156	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs12718490	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs12794575	0.94[CEU][hapmap]
rs12796913	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs12807735	0.84[EUR][1000 genomes]
rs1356455	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1356456	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1372045	0.88[CEU][hapmap]
rs1372046	0.94[CEU][hapmap]
rs1474087	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1517905	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1517906	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1517907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517910	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1589126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1607285	0.94[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs1607287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135319	0.84[YRI][hapmap]
rs1816748	0.84[AFR][1000 genomes]
rs1850544	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914599	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1914600	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1945083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945086	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1969315	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973714	0.95[ASN][1000 genomes]
rs1980204	1.00[CEU][hapmap]
rs1980205	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2090524	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119456	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2119457	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2119458	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2156770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203755	1.00[CEU][hapmap]
rs2372388	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3740764	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851191	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3914687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4379869	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4457775	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4460836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471450	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4488228	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4488229	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4944128	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4944129	0.80[EUR][1000 genomes]
rs4944131	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945115	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945116	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945124	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs4945125	0.83[EUR][1000 genomes]
rs4945127	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945131	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945133	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591043	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592671	0.88[CEU][hapmap]
rs6592676	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592678	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592679	0.84[AFR][1000 genomes]
rs6592680	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs6592682	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592683	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592684	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6592687	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs6592689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592690	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592692	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592693	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592694	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101593	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7103308	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7103500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7105694	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105895	0.81[AFR][1000 genomes]
rs7106625	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7107505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110305	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110532	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110849	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7113282	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7113290	0.94[CEU][hapmap]
rs7113647	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114827	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7116513	0.82[AFR][1000 genomes]
rs7116800	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs7117545	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7117682	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7118762	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7119361	1.00[CEU][hapmap]
rs7119492	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120215	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7121273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121920	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122736	0.84[EUR][1000 genomes]
rs7123496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128038	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128770	0.80[EUR][1000 genomes]
rs7129147	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7129388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924613	0.93[CEU][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924888	0.81[AFR][1000 genomes]
rs7925135	0.94[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926122	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926409	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927658	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7927731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929837	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7931561	0.94[CEU][hapmap]
rs7931646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931894	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7932288	0.94[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs7933351	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7937883	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7940782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942574	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7943913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950001	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951501	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs9326485	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs938810	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs949339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963704	1.00[CEU][hapmap];0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:76666800-76695400	Weak transcription	NHEK	skin
3	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
4	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
6	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:76675000-76725600	Weak transcription	A549	lung
8	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:76684400-76699400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:76688400-76695600	Weak transcription	HMEC	breast
15	chr11:76688600-76695600	Weak transcription	Stomach Mucosa	stomach
16	chr11:76688600-76710800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:76689200-76696000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:76689200-76734600	Weak transcription	Liver	Liver
19	chr11:76689400-76700600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:76689400-76700800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:76689600-76701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:76689600-76717800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
24	chr11:76689800-76698000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:76689800-76699000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:76689800-76699400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:76689800-76704800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:76689800-76708400	Weak transcription	Primary T cells from cord blood	blood
29	chr11:76689800-76731400	Weak transcription	Ovary	ovary
30	chr11:76690000-76699800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:76690000-76706000	Weak transcription	Gastric	stomach
32	chr11:76690000-76709200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:76690000-76718000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:76690000-76718600	Weak transcription	Primary B cells from cord blood	blood
35	chr11:76690000-76722000	Weak transcription	Aorta	Aorta
36	chr11:76690000-76723800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:76690200-76695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:76690200-76695800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:76690200-76696000	Weak transcription	Adipose Nuclei	Adipose
41	chr11:76690200-76696200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:76690200-76696200	Weak transcription	Esophagus	oesophagus
43	chr11:76690200-76698400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:76690200-76704000	Weak transcription	Lung	lung
45	chr11:76690200-76704800	Weak transcription	Fetal Stomach	stomach
46	chr11:76690200-76709200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:76690200-76710000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:76690200-76710600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:76690200-76722000	Weak transcription	Spleen	Spleen
50	chr11:76690200-76729000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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