Variant report

Variant	rs10903321
Chromosome Location	chr8:10069485-10069486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10089339	1.00[CHB][hapmap]
rs10097184	1.00[CHB][hapmap]
rs10111917	1.00[CHB][hapmap]
rs11249975	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11774220	1.00[CHB][hapmap]
rs11774276	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11776035	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11776973	1.00[CHB][hapmap]
rs11780122	1.00[CHB][hapmap]
rs11783705	1.00[CHB][hapmap]
rs12156387	1.00[CHB][hapmap]
rs13252589	1.00[CHB][hapmap]
rs13263482	1.00[CHB][hapmap]
rs13272793	1.00[CHB][hapmap]
rs13279701	1.00[CHB][hapmap]
rs1484641	1.00[CHB][hapmap]
rs17151658	1.00[CHB][hapmap]
rs17151667	1.00[CHB][hapmap]
rs17151675	1.00[CHB][hapmap]
rs17151684	1.00[CHB][hapmap]
rs17151699	1.00[CHB][hapmap]
rs17151713	1.00[CHB][hapmap]
rs17151728	1.00[CHB][hapmap]
rs17151741	1.00[CHB][hapmap]
rs17151745	1.00[CHB][hapmap]
rs17151748	1.00[CHB][hapmap]
rs17151763	1.00[CHB][hapmap]
rs17690549	1.00[CHB][hapmap]
rs17693945	1.00[CHB][hapmap]
rs17694485	1.00[CHB][hapmap]
rs17707665	1.00[CHB][hapmap]
rs17707988	1.00[CHB][hapmap]
rs17708090	1.00[CHB][hapmap]
rs17708114	1.00[CHB][hapmap]
rs17746227	1.00[CHB][hapmap]
rs17746245	1.00[CHB][hapmap]
rs17747335	1.00[CHB][hapmap]
rs17750324	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs17751178	1.00[CHB][hapmap]
rs4240640	1.00[CHB][hapmap]
rs4394398	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4840467	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs4841294	1.00[CHB][hapmap]
rs4841295	1.00[CHB][hapmap]
rs4841296	1.00[CHB][hapmap]
rs4841312	1.00[CHB][hapmap]
rs6985941	1.00[CHB][hapmap]
rs6994060	1.00[CHB][hapmap]
rs6997224	1.00[CHB][hapmap]
rs7014570	1.00[CHB][hapmap]
rs7822745	1.00[CHB][hapmap]
rs7835507	1.00[CHB][hapmap]
rs7835960	1.00[CHB][hapmap]
rs7840347	1.00[CHB][hapmap];0.93[GIH][hapmap];0.81[MKK][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv890345	chr8:10068073-10093228	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10903321	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs10903321	BLK	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10053800-10087000	Weak transcription	Spleen	Spleen
2	chr8:10055400-10074600	Weak transcription	Left Ventricle	heart
3	chr8:10055400-10078400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:10055600-10086200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:10058400-10077600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:10058400-10086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:10060200-10103000	Weak transcription	Gastric	stomach
8	chr8:10061200-10074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:10061400-10071200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr8:10062600-10078200	Weak transcription	Pancreas	Pancrea
11	chr8:10062600-10078400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:10062800-10078200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:10063400-10075200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:10063600-10075400	Weak transcription	Brain Substantia Nigra	brain
15	chr8:10064400-10072600	Weak transcription	Lung	lung
16	chr8:10064400-10073000	Weak transcription	Aorta	Aorta
17	chr8:10064400-10086000	Weak transcription	Brain Anterior Caudate	brain
18	chr8:10064600-10071200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:10064800-10079600	Weak transcription	Primary B cells from cord blood	blood
20	chr8:10065000-10071000	Weak transcription	Adipose Nuclei	Adipose
21	chr8:10065000-10071600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:10065000-10073400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:10065200-10070400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:10065200-10078400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:10065400-10071800	Weak transcription	Brain Germinal Matrix	brain
26	chr8:10066000-10071600	Weak transcription	Fetal Brain Female	brain
27	chr8:10066200-10071600	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:10066400-10074400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:10066800-10074400	Weak transcription	Right Ventricle	heart
30	chr8:10067600-10071000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr8:10067800-10071800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:10068000-10071400	Weak transcription	Liver	Liver
33	chr8:10068000-10079400	Weak transcription	Ovary	ovary
34	chr8:10068200-10069600	Enhancers	Fetal Intestine Large	intestine
35	chr8:10068200-10081400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr8:10068400-10074000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:10068800-10071200	Weak transcription	Primary T cells from cord blood	blood
38	chr8:10068800-10074000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr8:10069000-10071600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:10069200-10071000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:10069200-10073200	Weak transcription	Fetal Intestine Small	intestine
42	chr8:10069400-10071200	Weak transcription	Fetal Brain Male	brain

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