Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10798244	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10912499	0.81[EUR][1000 genomes]
rs10912501	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12402215	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12409216	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12410129	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12565596	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12567579	0.88[EUR][1000 genomes]
rs1883475	0.93[EUR][1000 genomes]
rs2051629	0.93[EUR][1000 genomes]
rs2187893	0.93[EUR][1000 genomes]
rs2206363	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2206364	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2206365	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2206366	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4916287	0.83[EUR][1000 genomes]
rs4916288	0.93[EUR][1000 genomes]
rs4916289	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4916290	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6668693	0.93[EUR][1000 genomes]
rs6674470	0.81[EUR][1000 genomes]
rs7517726	0.80[EUR][1000 genomes]
rs7539951	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9283384	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172918000-172929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172921600-172929600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:172924800-172929400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:172925000-172929000	Weak transcription	Osteobl	bone
5	chr1:172925000-172929400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:172925000-172929400	Weak transcription	NHEK	skin
7	chr1:172925200-172929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:172925200-172929000	Weak transcription	Fetal Stomach	stomach
9	chr1:172925200-172929200	Weak transcription	NH-A	brain
10	chr1:172925400-172928600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:172925400-172928800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:172925400-172929000	Weak transcription	NHLF	lung
13	chr1:172925400-172929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:172925800-172929000	Weak transcription	NHDF-Ad	bronchial
15	chr1:172926000-172928800	Weak transcription	HSMMtube	muscle
16	chr1:172926000-172929000	Weak transcription	HSMM	muscle
17	chr1:172926200-172928800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:172927200-172928800	Weak transcription	HUVEC	blood vessel
19	chr1:172928000-172929400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr1:172928000-172930000	Enhancers	Rectal Mucosa Donor 31	rectum

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