Variant report

Variant	rs10915691
Chromosome Location	chr1:224863475-224863476
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224862745..224864541-chr1:224886304..224888766,2	K562	blood:
2	chr1:224855725..224858424-chr1:224861693..224865201,3	K562	blood:
3	chr1:224855793..224857580-chr1:224861693..224864223,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1036431	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1039265	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10495227	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10915693	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10915695	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1106233	0.83[CEU][hapmap]
rs11805320	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12058085	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12060334	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12062831	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12065840	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12068125	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12072810	0.90[EUR][1000 genomes]
rs12073052	0.90[EUR][1000 genomes]
rs12077707	1.00[CEU][hapmap]
rs12079156	0.81[EUR][1000 genomes]
rs12088524	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12092532	0.89[EUR][1000 genomes]
rs12096245	0.83[CEU][hapmap]
rs12562581	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12565092	0.81[EUR][1000 genomes]
rs12567125	0.90[EUR][1000 genomes]
rs1337538	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1465766	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1465767	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1499289	0.83[CEU][hapmap]
rs1532557	0.83[CEU][hapmap]
rs16850786	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4363402	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61603030	0.90[EUR][1000 genomes]
rs61827113	0.81[EUR][1000 genomes]
rs61827152	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6426147	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6695864	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7541279	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7554310	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs883116	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224832800-224869000	Weak transcription	Dnd41	blood
3	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:224857200-224869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:224857200-224869200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:224858400-224871800	Weak transcription	NHLF	lung
7	chr1:224858400-224874200	Weak transcription	NH-A	brain
8	chr1:224859600-224871400	Weak transcription	NHDF-Ad	bronchial
9	chr1:224861000-224863600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:224861200-224865200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:224861200-224876800	Weak transcription	Ovary	ovary
12	chr1:224862400-224865200	Weak transcription	Right Atrium	heart
13	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
14	chr1:224862800-224864200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:224862800-224869400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:224863400-224864200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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