Variant report

Variant	rs10915704
Chromosome Location	chr1:224902054-224902055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224899513..224902997-chr1:224905625..224908310,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10799589	0.91[LWK][hapmap];0.88[MKK][hapmap]
rs10915684	1.00[YRI][hapmap]
rs10915698	1.00[YRI][hapmap]
rs12121558	1.00[YRI][hapmap]
rs12406422	0.95[ASN][1000 genomes]
rs12730234	0.80[AFR][1000 genomes]
rs1369847	1.00[YRI][hapmap]
rs1436168	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1436169	1.00[YRI][hapmap]
rs1436172	1.00[YRI][hapmap]
rs1603917	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs16851979	1.00[CHB][hapmap]
rs169888	1.00[YRI][hapmap]
rs2117941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2648746	1.00[YRI][hapmap]
rs2897161	1.00[YRI][hapmap]
rs298735	1.00[YRI][hapmap]
rs3012185	1.00[YRI][hapmap]
rs4653591	1.00[YRI][hapmap]
rs4653592	1.00[YRI][hapmap]
rs4653594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4654060	0.91[LWK][hapmap];0.88[MKK][hapmap]
rs6426151	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6426152	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6661687	1.00[CHB][hapmap]
rs6667034	1.00[YRI][hapmap]
rs6675980	1.00[CEU][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6685335	0.82[CHB][hapmap]
rs6692860	1.00[CHB][hapmap]
rs6695061	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7513442	1.00[CHB][hapmap]
rs7535296	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs7537973	1.00[YRI][hapmap]
rs7545558	0.82[CHB][hapmap]
rs7555388	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
2	chr1:224896200-224914000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:224896400-224910600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:224896400-224913800	Weak transcription	NHLF	lung
5	chr1:224896400-224914000	Weak transcription	NH-A	brain
6	chr1:224896600-224902600	Weak transcription	NHDF-Ad	bronchial
7	chr1:224898400-224904400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:224900600-224904200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:224901000-224904200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:224901200-224907000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:224901600-224906800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:224902000-224902400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:224902000-224903000	Enhancers	Pancreas	Pancrea
14	chr1:224902000-224903200	ZNF genes & repeats	Dnd41	blood

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