Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNIH3-1	chr1:224954058-224954855	XLOC_000584

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10915712	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10915714	1.00[ASN][1000 genomes]
rs10915718	0.89[ASN][1000 genomes]
rs12068939	1.00[JPT][hapmap]
rs12079195	0.96[ASN][1000 genomes]
rs13374584	1.00[EUR][1000 genomes]
rs59279645	1.00[EUR][1000 genomes]
rs59777302	1.00[EUR][1000 genomes]
rs60002937	1.00[EUR][1000 genomes]
rs60846144	1.00[EUR][1000 genomes]
rs61745064	1.00[EUR][1000 genomes]
rs6658918	1.00[EUR][1000 genomes]
rs6702972	1.00[EUR][1000 genomes]
rs73127901	1.00[EUR][1000 genomes]
rs73129810	1.00[EUR][1000 genomes]
rs73129812	1.00[EUR][1000 genomes]
rs73129837	1.00[EUR][1000 genomes]
rs73129838	1.00[EUR][1000 genomes]
rs73129850	1.00[EUR][1000 genomes]
rs73129853	1.00[EUR][1000 genomes]
rs73129855	1.00[EUR][1000 genomes]
rs73129861	1.00[EUR][1000 genomes]
rs73129867	1.00[EUR][1000 genomes]
rs73129870	1.00[EUR][1000 genomes]
rs74146264	1.00[EUR][1000 genomes]
rs74146389	1.00[EUR][1000 genomes]
rs7522229	1.00[EUR][1000 genomes]
rs9661679	1.00[EUR][1000 genomes]
rs9661938	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224944800-224954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:224948000-224956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:224953000-224960800	Weak transcription	Pancreas	Pancrea
4	chr1:224953800-224955000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:224954000-224954200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:224954000-224954400	Enhancers	Fetal Brain Male	brain
7	chr1:224954000-224955000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:224954000-224955800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:224954000-224956200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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