Variant report

Variant	rs10915718
Chromosome Location	chr1:224971986-224971987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224968181..224972472-chr1:224972623..224976659,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10915712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10915713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915714	0.89[ASN][1000 genomes]
rs10915744	1.00[JPT][hapmap]
rs10915748	1.00[JPT][hapmap]
rs10915749	1.00[JPT][hapmap]
rs10915750	1.00[JPT][hapmap]
rs10915751	1.00[JPT][hapmap]
rs12068731	1.00[JPT][hapmap]
rs12068939	1.00[JPT][hapmap]
rs12069537	1.00[JPT][hapmap]
rs12071453	1.00[JPT][hapmap]
rs12073050	1.00[JPT][hapmap]
rs12079195	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12086122	1.00[JPT][hapmap]
rs1482278	1.00[JPT][hapmap]
rs16858965	1.00[JPT][hapmap]
rs6700281	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224958000-224972400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:224958800-224972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:224970000-224973000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:224970400-224972000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:224970400-224974400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:224971000-224972200	Enhancers	Fetal Thymus	thymus
7	chr1:224971000-224975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:224971000-224975400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:224971200-224972200	Weak transcription	HMEC	breast
10	chr1:224971200-224972200	Weak transcription	HSMMtube	muscle
11	chr1:224971400-224972200	Flanking Active TSS	Dnd41	blood
12	chr1:224971400-224972800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:224971400-224972800	Enhancers	NHLF	lung
14	chr1:224971400-224973000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:224971400-224973600	Enhancers	Osteobl	bone
16	chr1:224971400-224975400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:224971400-224975400	Enhancers	NHDF-Ad	bronchial
18	chr1:224971600-224972200	Enhancers	Ovary	ovary
19	chr1:224971600-224972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:224971600-224973400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:224971800-224972000	Enhancers	GM12878-XiMat	blood
22	chr1:224971800-224972200	Enhancers	Spleen	Spleen

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