Variant report

Variant	rs10915856
Chromosome Location	chr1:225867046-225867047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10915857	0.93[AMR][1000 genomes]
rs17504298	0.80[AFR][1000 genomes]
rs17569722	0.80[AFR][1000 genomes]
rs60240796	0.93[AMR][1000 genomes]
rs60377022	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6426082	0.86[AMR][1000 genomes]
rs73125729	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225863800-225868600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:225865400-225872600	Weak transcription	Aorta	Aorta
3	chr1:225865400-225878600	Weak transcription	Right Atrium	heart
4	chr1:225865600-225888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:225865800-225867200	Weak transcription	Placenta	Placenta
6	chr1:225865800-225867400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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