Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10801208	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10801211	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801212	0.89[AFR][1000 genomes]
rs10801213	0.89[AFR][1000 genomes]
rs10801226	0.83[ASW][hapmap];0.82[MKK][hapmap]
rs10921412	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs12022959	0.91[AFR][1000 genomes]
rs12028044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086172	0.82[CHD][hapmap]
rs1410402	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556901	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578127	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16835709	0.81[ASN][1000 genomes]
rs1887726	0.82[AFR][1000 genomes]
rs2031831	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2370444	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2370445	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34745330	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4657876	0.86[AFR][1000 genomes]
rs6673280	0.81[CHD][hapmap]
rs7547559	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs958958	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193622000-193627400	Weak transcription	Fetal Brain Male	brain
2	chr1:193624000-193627400	Weak transcription	Fetal Heart	heart
3	chr1:193624400-193627200	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:193624400-193628600	Weak transcription	Left Ventricle	heart
5	chr1:193624400-193629000	Weak transcription	Aorta	Aorta
6	chr1:193624600-193625400	Enhancers	Hela-S3	cervix
7	chr1:193624600-193627400	Weak transcription	Small Intestine	intestine
8	chr1:193624800-193626000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:193624800-193629000	Weak transcription	HSMMtube	muscle

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