Variant report

Variant	rs10921422
Chromosome Location	chr1:193702858-193702859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:193702754-193703226	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr1:193702789-193703067	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000252241	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10489780	0.84[ASN][1000 genomes]
rs10489781	0.84[ASN][1000 genomes]
rs10801244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10801247	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs10801251	0.84[ASN][1000 genomes]
rs10921431	0.86[ASN][1000 genomes]
rs10921438	0.81[ASN][1000 genomes]
rs12410982	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1326852	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1326856	0.87[ASN][1000 genomes]
rs1328194	0.85[CEU][hapmap]
rs1328197	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410390	0.84[ASN][1000 genomes]
rs1576164	0.81[ASN][1000 genomes]
rs1999034	0.81[CEU][hapmap];0.80[YRI][hapmap]
rs2148556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2209674	0.89[ASN][1000 genomes]
rs2225074	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4344313	0.89[ASN][1000 genomes]
rs4657881	0.86[ASN][1000 genomes]
rs6673280	0.84[CEU][hapmap]
rs6676939	0.83[ASN][1000 genomes]
rs6677654	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6692017	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7527158	0.84[CEU][hapmap]
rs7528858	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv441729	chr1:193661018-193710376	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3693068	chr1:193661626-193709696	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv872832	chr1:193661626-193850407	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv34261	chr1:193663276-193710196	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34863	chr1:193663276-193710196	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv872833	chr1:193681625-193774083	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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