Variant report

Variant	rs10921491
Chromosome Location	chr1:194021844-194021845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10733081	0.83[EUR][1000 genomes]
rs10921495	0.90[ASN][1000 genomes]
rs12124021	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1372643	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1442421	0.80[EUR][1000 genomes]
rs2584257	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2895663	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs509469	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs511374	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs534209	0.84[EUR][1000 genomes]
rs624023	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs627525	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs634899	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs637225	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs651794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs665903	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6672135	0.82[EUR][1000 genomes]
rs685287	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72745140	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7417488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9783003	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9943099	0.83[EUR][1000 genomes]
rs9943193	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9943194	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194020400-194030800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:194020800-194030800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:194021000-194022400	Enhancers	Thymus	Thymus
4	chr1:194021000-194023600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr1:194021200-194022400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:194021200-194022400	Enhancers	Fetal Thymus	thymus
7	chr1:194021200-194024800	Weak transcription	Small Intestine	intestine
8	chr1:194021200-194027600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:194021400-194022200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:194021400-194022400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:194021600-194022000	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr1:194021600-194022200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:194021600-194022400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr1:194021800-194022000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:194021800-194022000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:194021800-194022200	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr1:194021800-194022400	Enhancers	Primary hematopoietic stem cells	blood

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