Variant report

Variant	rs10921927
Chromosome Location	chr1:195794518-195794519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195793131..195796113-chr1:195827514..195829536,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10218627	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921926	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10921962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057268	1.00[AMR][1000 genomes]
rs12064485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086144	1.00[AMR][1000 genomes]
rs12086305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12092340	1.00[EUR][1000 genomes]
rs12092898	1.00[EUR][1000 genomes]
rs12094869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16838964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16838968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16838969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16838971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16838972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4276893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4540641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55654011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55917394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56677640	1.00[EUR][1000 genomes]
rs56759581	1.00[EUR][1000 genomes]
rs57214547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57468767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59149191	1.00[AMR][1000 genomes]
rs59797206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59985889	1.00[AMR][1000 genomes]
rs60800880	1.00[EUR][1000 genomes]
rs61046734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61310168	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512857	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132923	1.00[AMR][1000 genomes]
rs74132954	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527210	1.00[AMR][1000 genomes]
rs7540814	1.00[AMR][1000 genomes]
rs9803735	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1014402	chr1:195792089-195877256	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3406540	chr1:195794129-195798427	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195793800-195794600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:195794200-195800400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:195794400-195796800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:195794400-195797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:195794400-195797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:195794400-195797400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:195794400-195797400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:195794400-195797600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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